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BioLiP
>dna
cacagtgatgcaaatcaagtgtgaagccagacaaaaacccg

The query sequence (length=41) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oem:J 57 41 1.0000 0.7193 1.0000 3.33e-17 6oen:J, 6oeo:J, 6oep:J, 6oeq:J, 6oer:J
2 6oem:G 57 41 1.0000 0.7193 1.0000 3.33e-17 6oen:G, 6oeo:G, 6oep:G, 6oeq:G
3 6cg0:M 41 41 1.0000 1.0000 1.0000 3.33e-17 6cij:M
4 6cg0:G 60 41 1.0000 0.6833 1.0000 3.33e-17 6cij:G
5 5ze2:M 40 40 0.9756 1.0000 1.0000 1.20e-16
6 6oer:G 57 40 0.9756 0.7018 1.0000 1.20e-16
7 5ze2:G 40 39 0.9512 0.9750 1.0000 4.30e-16
8 5zdz:G 54 39 0.9512 0.7222 1.0000 4.30e-16 5ze0:G, 5ze1:G
9 6oet:G 59 39 0.9512 0.6610 1.0000 4.30e-16
10 6cim:J 52 39 0.9512 0.7500 1.0000 4.30e-16
11 6cim:G 52 39 0.9512 0.7500 1.0000 4.30e-16
12 6cil:J 53 39 0.9512 0.7358 1.0000 4.30e-16
13 6cil:G 53 39 0.9512 0.7358 1.0000 4.30e-16
14 6cik:M 39 39 0.9512 1.0000 1.0000 4.30e-16 6oet:M, 5zdz:M, 5ze0:M, 5ze1:M
15 6cik:G 51 39 0.9512 0.7647 1.0000 4.30e-16

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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