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BioLiP
>dna
cacaaatccattgacaaaagaaggctaaaagggcatatcctcggcctttg

The query sequence (length=50) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pst:O 50 50 1.0000 1.0000 1.0000 4.05e-22
2 6psw:P 62 51 1.0000 0.8065 0.9804 1.88e-20
3 6psw:O 62 51 1.0000 0.8065 0.9804 1.88e-20
4 6psq:P 50 50 0.9800 0.9800 0.9800 6.77e-20
5 6psq:O 50 50 0.9800 0.9800 0.9800 6.77e-20
6 6pst:P 51 51 0.9600 0.9412 0.9412 4.08e-17
7 6pss:O 43 43 0.8400 0.9767 0.9767 5.27e-16
8 6psv:P 50 38 0.7600 0.7600 1.0000 1.90e-15
9 6psv:O 55 42 0.8200 0.7455 0.9762 1.90e-15
10 6psu:O 42 42 0.8200 0.9762 0.9762 1.90e-15
11 6oul:P 61 42 0.8200 0.6721 0.9762 1.90e-15
12 6psu:P 37 37 0.7400 1.0000 1.0000 6.82e-15
13 6psr:O 36 35 0.7000 0.9722 1.0000 8.82e-14
14 6pss:P 43 34 0.6800 0.7907 1.0000 3.17e-13
15 6psr:P 35 34 0.6800 0.9714 1.0000 3.17e-13
16 6oul:Q 56 34 0.6800 0.6071 1.0000 3.17e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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