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BioLiP
>dna
agtgtcttcttctttc

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 8e14:K 16 16 1.0000 1.0000 1.0000 32 8e14:N
2 4ati:D 16 16 0.6250 0.6250 0.6250 2
3 4ejy:C 16 16 0.6250 0.6250 0.6250 2 4ejy:E, 4ejz:C, 4ejz:E, 3twm:C, 3twm:E
4 4osj:G 16 16 0.6250 0.6250 0.6250 2 4ost:G, 4ot0:G, 4ot3:G
5 4osr:G 16 16 0.6250 0.6250 0.6250 2 4oss:G
6 8kg9:I 15 15 0.7500 0.8000 0.8000 0
7 2c62:C 16 16 0.5625 0.5625 0.5625 -3
8 3pw7:B 16 16 0.5625 0.5625 0.5625 -3 3pw7:F
9 4p0p:E 16 16 0.5625 0.5625 0.5625 -3
10 5zyt:G 17 16 0.7500 0.7059 0.7500 -3
11 6lew:C 16 16 0.5625 0.5625 0.5625 -3
12 6n7t:T 16 16 0.5625 0.5625 0.5625 -3 6n7v:T, 8qqu:E, 6sko:I, 8u5y:D, 8u61:E, 1uaa:C, 6vaa:Z
13 7oyk:FFF 16 16 0.5625 0.5625 0.5625 -3 7oyk:KKK, 7oyk:HHH
14 1ckt:B 16 16 0.4375 0.4375 0.4375 -8
15 1drg:B 16 16 0.5000 0.5000 0.5000 -8 1f44:M
16 1pue:B 16 16 0.5000 0.5000 0.5000 -8 1pue:D
17 1ryr:C 16 16 0.5000 0.5000 0.5000 -8
18 2c2r:T 16 16 0.5000 0.5000 0.5000 -8 2uvv:T, 2w8k:T, 2w8l:T, 2w9a:T, 2w9c:E, 2w9c:F
19 2ia6:F 16 16 0.5000 0.5000 0.5000 -8
20 2is1:C 16 16 0.5000 0.5000 0.5000 -8
21 2jef:T 16 16 0.5000 0.5000 0.5000 -8 2jei:T
22 4d1q:D 16 16 0.5000 0.5000 0.5000 -8 4d1q:F, 4d1q:J, 4d1q:L
23 4gc6:T 16 16 0.5000 0.5000 0.5000 -8 2j6s:T, 2w9b:E, 2w9b:F
24 5jub:Z 17 16 0.6875 0.6471 0.6875 -8
25 6py8:D 16 16 0.5000 0.5000 0.5000 -8 6py8:Y
26 6vg6:T 16 16 0.5000 0.5000 0.5000 -8 6vg6:C, 6vgm:C, 6vgm:T
27 6xwh:B 16 16 0.5000 0.5000 0.5000 -8
28 8e4h:D 16 16 0.5000 0.5000 0.5000 -8 8vdi:D
29 8ekz:D 16 16 0.5000 0.5000 0.5000 -8
30 8jsi:T 16 16 0.5000 0.5000 0.5000 -8 8jsi:U, 8wd8:T, 8wd8:U
31 4ol8:D 15 15 0.6250 0.6667 0.6667 -10
32 4osh:I 15 15 0.6250 0.6667 0.6667 -10
33 4qtr:E 15 15 0.6250 0.6667 0.6667 -10
34 1t3n:T 14 14 0.6250 0.7143 0.7143 -11
35 1zet:T 14 14 0.4375 0.5000 0.5000 -11
36 5vl9:E 14 14 0.6250 0.7143 0.7143 -11 5vl9:G
37 1nk2:A 16 16 0.4375 0.4375 0.4375 -13 1nk3:A
38 2gat:C 16 16 0.4375 0.4375 0.4375 -13 3gat:C
39 2gm4:J 17 16 0.6250 0.5882 0.6250 -13
40 2wt7:C 16 16 0.4375 0.4375 0.4375 -13
41 2z33:B 16 16 0.4375 0.4375 0.4375 -13
42 3co6:A 16 16 0.4375 0.4375 0.4375 -13
43 3coa:A 16 16 0.4375 0.4375 0.4375 -13 3coa:D
44 3g99:C 16 16 0.4375 0.4375 0.4375 -13 3g9i:C
45 3sq2:T 16 16 0.4375 0.4375 0.4375 -13 3sun:T, 3suq:T
46 4atk:C 16 16 0.4375 0.4375 0.4375 -13 4atk:D, 5eyo:B, 5eyo:D
47 4gg4:G 17 16 0.6250 0.5882 0.6250 -13 4osi:G, 4osm:G, 4osm:I, 4ost:I, 4osv:G, 4osv:I, 4osw:G, 4osw:I, 4osz:G, 4osz:I, 4ot0:I, 4ot3:I, 4oto:G, 4oto:I, 3v6t:G, 3v6t:I
48 4hqe:D 17 16 0.6250 0.5882 0.6250 -13
49 4ol8:H 16 16 0.4375 0.4375 0.4375 -13
50 4osl:G 17 16 0.6250 0.5882 0.6250 -13 4osl:I, 4osq:G, 4osq:I, 4osr:I, 4oss:I
51 4q0w:C 16 16 0.4375 0.4375 0.4375 -13
52 5co8:X 16 16 0.4375 0.4375 0.4375 -13
53 5e69:D 16 16 0.4375 0.4375 0.4375 -13
54 5e6c:D 16 16 0.4375 0.4375 0.4375 -13
55 5gq9:D 16 16 0.4375 0.4375 0.4375 -13 5gq9:F, 5xou:D, 5xou:F, 5xq2:Y, 5xq2:F
56 5z7d:J 16 16 0.4375 0.4375 0.4375 -13 5z7d:L
57 5zdz:I 16 16 0.4375 0.4375 0.4375 -13 5ze0:I, 5ze1:I
58 6a57:B 16 16 0.4375 0.4375 0.4375 -13
59 6bch:B 16 16 0.4375 0.4375 0.4375 -13 6bch:E, 6bch:I, 6bch:N, 3r7p:B
60 6g1l:B 16 16 0.4375 0.4375 0.4375 -13
61 6khy:H 16 16 0.4375 0.4375 0.4375 -13
62 6l6y:A 16 16 0.4375 0.4375 0.4375 -13 6l6y:C
63 6o0x:D 16 16 0.4375 0.4375 0.4375 -13 6o0y:D
64 6ryd:C 16 16 0.4375 0.4375 0.4375 -13 6ryd:G
65 7eyi:A 16 16 0.4375 0.4375 0.4375 -13
66 7jlg:G 16 16 0.4375 0.4375 0.4375 -13
67 7l4f:G 17 16 0.6250 0.5882 0.6250 -13
68 7s4x:C 16 16 0.4375 0.4375 0.4375 -13 8u3y:C
69 7txc:B 16 16 0.4375 0.4375 0.4375 -13
70 7vou:A 16 16 0.4375 0.4375 0.4375 -13
71 7y3k:H 16 16 0.4375 0.4375 0.4375 -13 7y3m:H, 7y3m:E, 7y3m:L
72 8e3k:D 16 16 0.4375 0.4375 0.4375 -13 8e5y:D, 8emd:D, 8eng:D, 8eo1:D, 8eo4:D, 8smh:D, 8sp1:D, 8t9u:D
73 8e3r:D 16 16 0.4375 0.4375 0.4375 -13 8ej8:D
74 8ej6:D 16 16 0.4375 0.4375 0.4375 -13
75 8tzz:C 16 16 0.4375 0.4375 0.4375 -13
76 7ouf:I 21 16 0.8125 0.6190 0.8125 -14 7ouf:K, 7oug:I, 7oug:K, 7ouh:I, 7ouh:K, 7pel:K, 7pel:M
77 1crx:E 15 15 0.5625 0.6000 0.6000 -15
78 1fn7:D 15 15 0.5625 0.6000 0.6000 -15 1hu0:E, 1lwv:E, 1lww:E, 1lwy:E, 1m3q:C, 1n39:C, 1n3a:C
79 2ccz:C 15 15 0.5625 0.6000 0.6000 -15 9cex:B, 3cmu:B, 6n7i:T, 6n7n:T
80 2ief:D 15 15 0.5625 0.6000 0.6000 -15
81 3ei2:H 15 15 0.5625 0.6000 0.6000 -15
82 3pr4:T 15 15 0.5625 0.6000 0.6000 -15 3pr5:T
83 4h10:D 15 15 0.5625 0.6000 0.6000 -15
84 4osh:G 15 15 0.5625 0.6000 0.6000 -15
85 6lbm:A 15 15 0.5625 0.6000 0.6000 -15
86 1fjl:F 14 14 0.5625 0.6429 0.6429 -16
87 1qn5:D 14 14 0.5625 0.6429 0.6429 -16 1qn5:F
88 1qnc:D 14 14 0.5625 0.6429 0.6429 -16 1qnc:F
89 2eux:C 14 14 0.5625 0.6429 0.6429 -16
90 2evh:C 14 14 0.5625 0.6429 0.6429 -16
91 2evj:C 14 14 0.5625 0.6429 0.6429 -16
92 8aas:F 14 14 0.5625 0.6429 0.6429 -16 4esv:V, 4h5q:D, 6irq:E, 4jrp:C, 4jrp:D, 2ltt:C, 5u8t:F, 4usg:C
93 9ezy:E 19 16 0.6875 0.5789 0.6875 -16
94 3m9o:T 18 16 0.6250 0.5556 0.6250 -17
95 5u33:D 14 14 0.6875 0.7857 0.7857 -17
96 6el8:B 13 13 0.5625 0.6923 0.6923 -17 6el8:E
97 6ray:X 13 13 0.5625 0.6923 0.6923 -17
98 6rny:Q 18 16 0.6250 0.5556 0.6250 -17 6rny:M
99 7l4m:D 18 16 0.6250 0.5556 0.6250 -17
100 7pu7:P 14 14 0.6875 0.7857 0.7857 -17
101 8ac2:N 18 16 0.6250 0.5556 0.6250 -17
102 1cit:C 16 16 0.3750 0.3750 0.3750 -18 7wnh:E, 7wnh:I, 7wnh:L, 7wnh:O
103 1lq1:E 16 16 0.3750 0.3750 0.3750 -18 1lq1:G
104 1n48:C 16 16 0.3750 0.3750 0.3750 -18 2va3:T
105 1n4l:D 16 16 0.3750 0.3750 0.3750 -18
106 1nh2:E 16 16 0.2500 0.2500 0.2500 -18
107 1trr:C 16 16 0.3750 0.3750 0.3750 -18 1trr:F, 1trr:I, 1trr:L
108 1ytf:E 16 16 0.3750 0.3750 0.3750 -18
109 2gzk:B 16 16 0.3750 0.3750 0.3750 -18
110 2i9t:C 17 16 0.5625 0.5294 0.5625 -18
111 2kdz:B 16 16 0.3750 0.3750 0.3750 -18 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
112 2kdz:C 16 16 0.3750 0.3750 0.3750 -18 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
113 2ntz:Y 16 16 0.3750 0.3750 0.3750 -18 2ntz:E
114 2ql2:E 16 16 0.3750 0.3750 0.3750 -18 2ql2:G
115 2v9w:F 16 16 0.3750 0.3750 0.3750 -18 2va2:D
116 3bs1:C 16 16 0.3125 0.3125 0.3125 -18
117 3fyl:C 16 16 0.3750 0.3750 0.3750 -18 3g9m:C, 3g9o:D, 3g9p:D
118 3g6q:D 16 16 0.3750 0.3750 0.3750 -18 3g6u:C
119 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
120 3gil:J 16 16 0.3750 0.3750 0.3750 -18
121 3rnu:L 16 16 0.3750 0.3750 0.3750 -18
122 4a0a:D 16 16 0.3750 0.3750 0.3750 -18
123 4a3m:T 17 16 0.5000 0.4706 0.5000 -18
124 4gc7:F 16 16 0.3750 0.3750 0.3750 -18
125 4gjp:I 17 16 0.5625 0.5294 0.5625 -18 6jtq:I, 6jtq:C, 6jvz:I, 6jvz:C, 6jw0:I, 6jw0:C, 6jw1:I, 6jw1:C, 6jw2:I, 6jw2:C, 6jw2:F, 6jw2:K, 6jw3:I, 6jw3:C, 6jw3:F, 6jw3:K, 6jw4:I, 6jw4:C, 6jw4:F, 6jw4:K, 6jw5:I, 6jw5:C, 6jw5:F, 6jw5:K, 6lew:I
126 4k96:F 17 16 0.5625 0.5294 0.5625 -18 4k96:H, 4o6a:F
127 4l0y:C 16 16 0.3750 0.3750 0.3750 -18 4l0z:C, 4l18:C, 4l18:G, 3ri4:B, 3ri4:E, 3wu1:C
128 4p0q:E 17 16 0.5625 0.5294 0.5625 -18
129 4ruc:T 17 16 0.5625 0.5294 0.5625 -18
130 4s2q:A 16 16 0.3750 0.3750 0.3750 -18
131 4xyq:C 16 16 0.3750 0.3750 0.3750 -18
132 5e6c:C 16 16 0.3750 0.3750 0.3750 -18
133 5eax:E 17 16 0.5625 0.5294 0.5625 -18 5eax:H, 8uzt:G
134 5kkq:B 17 16 0.5625 0.5294 0.5625 -18 5kkq:E, 5t00:B, 5t00:E
135 5ux0:F 16 16 0.3750 0.3750 0.3750 -18
136 5wmb:T 16 16 0.3750 0.3750 0.3750 -18
137 5xou:E 16 16 0.3750 0.3750 0.3750 -18
138 5zdz:J 16 16 0.3750 0.3750 0.3750 -18 5ze0:J, 5ze1:J
139 6ako:B 16 16 0.3750 0.3750 0.3750 -18 7cby:A, 3co7:A, 3co7:D, 5x07:D, 5x07:A, 5x07:G, 5x07:J
140 6bqu:D 16 16 0.3750 0.3750 0.3750 -18 6bsf:D
141 6cg0:I 16 16 0.3750 0.3750 0.3750 -18 6cij:I, 6dbi:I, 6dbi:J, 6dbj:I, 6dbj:J, 3jbw:I, 3jbw:J, 3jby:I, 3jby:J
142 6fqp:L 16 16 0.3750 0.3750 0.3750 -18 6fqp:M, 6fqq:L, 6fqq:M, 6fqq:G, 6fqq:H
143 6ny1:D 17 16 0.5625 0.5294 0.5625 -18
144 6ryd:D 16 16 0.3750 0.3750 0.3750 -18 6ryd:H
145 6vg2:C 16 16 0.3750 0.3750 0.3750 -18 6vg2:F, 6vg8:C, 6vgd:C, 6vge:C, 6vgg:C
146 7d8t:D 16 16 0.3750 0.3750 0.3750 -18
147 7l4v:C 16 16 0.3750 0.3750 0.3750 -18
148 7tqq:C 16 16 0.3750 0.3750 0.3750 -18 7tqq:H
149 7vov:C 16 16 0.3750 0.3750 0.3750 -18 7vox:E, 7vox:G
150 7y3k:G 16 16 0.3750 0.3750 0.3750 -18 7y3m:G, 7y3m:D, 7y3m:K
151 7yq8:F 16 16 0.3750 0.3750 0.3750 -18
152 7yzc:B 16 16 0.3750 0.3750 0.3750 -18 7yzf:A
153 7zwa:E 16 16 0.3750 0.3750 0.3750 -18
154 8bd4:U 16 16 0.3750 0.3750 0.3750 -18
155 8ebh:D 16 16 0.3750 0.3750 0.3750 -18 8ek3:D, 8smj:D
156 8ee9:D 16 16 0.3750 0.3750 0.3750 -18
157 8ekj:D 16 16 0.3750 0.3750 0.3750 -18 8eqg:D
158 8ekv:D 16 16 0.3750 0.3750 0.3750 -18
159 8eqk:D 16 16 0.3750 0.3750 0.3750 -18 8eql:D
160 8vdh:D 16 16 0.3750 0.3750 0.3750 -18
161 9bvd:G 16 16 0.3750 0.3750 0.3750 -18
162 1kfv:D 13 13 0.5000 0.6154 0.6154 -19 1kfv:G
163 5nnu:S 11 11 0.5625 0.8182 0.8182 -19 5nnu:U, 5nnu:W, 5nnu:Y
164 1cqt:N 15 15 0.5000 0.5333 0.5333 -20 1oct:B
165 1ebm:C 15 15 0.5000 0.5333 0.5333 -20 1n3c:C, 2nol:C
166 1imh:B 15 15 0.5000 0.5333 0.5333 -20 1owr:B, 1owr:D, 1owr:F, 1owr:H, 8ow4:C, 8ow4:H
167 1j4w:B 15 15 0.5000 0.5333 0.5333 -20
168 2c2d:T 15 15 0.5000 0.5333 0.5333 -20 2c2e:T, 4juz:B, 4jv1:B, 6l84:T
169 2ddg:C 15 15 0.5000 0.5333 0.5333 -20 2dem:C, 2dp6:C
170 2ezv:G 15 15 0.5000 0.5333 0.5333 -20
171 2is1:E 15 15 0.5000 0.5333 0.5333 -20 3pjr:Y
172 2nbj:C 15 15 0.5000 0.5333 0.5333 -20
173 3gpy:C 15 15 0.5000 0.5333 0.5333 -20
174 3knt:E 15 15 0.5000 0.5333 0.5333 -20 3knt:K
175 3m9m:T 15 15 0.5000 0.5333 0.5333 -20 3m9n:T
176 3pw4:B 15 15 0.5000 0.5333 0.5333 -20 3pw5:B
177 3pzp:T 15 15 0.5000 0.5333 0.5333 -20
178 3sv4:C 15 15 0.5000 0.5333 0.5333 -20
179 3wts:E 15 15 0.5000 0.5333 0.5333 -20 3wts:J, 3wtt:E, 3wtt:J, 3wtu:E, 3wtu:J, 3wtv:E, 3wtv:J, 3wtw:E, 3wtw:J, 3wtx:E, 3wtx:J, 3wty:E, 3wty:J
180 4a09:H 15 15 0.5000 0.5333 0.5333 -20
181 4gc7:D 15 15 0.5000 0.5333 0.5333 -20
182 4gfh:E 15 15 0.5000 0.5333 0.5333 -20 4gfh:J, 3l4j:E, 3l4k:E, 8xrf:F
183 4gjp:G 15 15 0.5000 0.5333 0.5333 -20
184 4jv0:B 15 15 0.5000 0.5333 0.5333 -20 4jv2:B
185 4zcf:E 20 16 0.6875 0.5500 0.6875 -20
186 5e5s:C 15 15 0.5000 0.5333 0.5333 -20 5e63:D, 4lox:D
187 5omv:T 15 15 0.5000 0.5333 0.5333 -20
188 5z00:A 15 15 0.5000 0.5333 0.5333 -20 5z00:E, 5z00:I
189 5zyt:F 11 11 0.6875 1.0000 1.0000 -20
190 6edc:C 15 15 0.5000 0.5333 0.5333 -20
191 6je4:D 15 15 0.5000 0.5333 0.5333 -20
192 6k2j:F 15 15 0.5000 0.5333 0.5333 -20
193 6kdv:E 15 15 0.5000 0.5333 0.5333 -20 6kdv:G
194 7f4y:P 15 15 0.5000 0.5333 0.5333 -20 7f4y:Q
195 7ftn:C 15 15 0.5000 0.5333 0.5333 -20
196 8ek8:D 15 15 0.5000 0.5333 0.5333 -20 8ek8:B
197 8hpa:D 15 15 0.5000 0.5333 0.5333 -20 7luf:D, 7luf:F
198 8rdu:7 15 15 0.5000 0.5333 0.5333 -20 8rkv:7
199 9ant:D 15 15 0.5000 0.5333 0.5333 -20 9ant:F, 5jlw:C, 5jlw:F, 5jlx:C, 5jlx:F, 4xic:C, 4xic:F, 4xid:C, 4xid:F
200 1fjl:D 14 14 0.5000 0.5714 0.5714 -21
201 1mnn:C 14 14 0.5000 0.5714 0.5714 -21
202 1qn4:D 14 14 0.5000 0.5714 0.5714 -21 1qn4:F
203 1qn6:D 14 14 0.5000 0.5714 0.5714 -21 1qn6:F
204 1qn9:D 14 14 0.5000 0.5714 0.5714 -21 1qn9:F
205 1qne:D 14 14 0.5000 0.5714 0.5714 -21 1qne:F, 6ueq:D, 1vtl:B, 1vtl:D, 1vto:D, 1vto:F
206 1rh6:C 14 14 0.5000 0.5714 0.5714 -21
207 2etw:C 14 14 0.5000 0.5714 0.5714 -21
208 2euw:C 14 14 0.5000 0.5714 0.5714 -21
209 2euz:C 14 14 0.5000 0.5714 0.5714 -21
210 2evf:C 14 14 0.5000 0.5714 0.5714 -21
211 2evg:C 14 14 0.5000 0.5714 0.5714 -21
212 2ia6:D 14 14 0.5000 0.5714 0.5714 -21
213 2vbl:C 14 14 0.5000 0.5714 0.5714 -21 2vbn:E
214 4bac:C 19 16 0.6250 0.5263 0.6250 -21 3l2q:C, 3l2r:C, 3l2u:C, 3l2v:C, 3l2w:C
215 4gcl:W 14 14 0.5000 0.5714 0.5714 -21 4gcl:Z, 4gcl:R, 4gcl:T
216 4hkq:F 14 14 0.5000 0.5714 0.5714 -21
217 4k97:E 14 14 0.5000 0.5714 0.5714 -21 4k98:E, 4k99:E, 4k9a:E, 4k9b:E, 4o6a:E, 5xzb:F, 5xze:F, 5xzg:F
218 4tqs:T 14 14 0.5000 0.5714 0.5714 -21
219 6fb1:D 14 14 0.5000 0.5714 0.5714 -21 6fb2:D
220 6l97:P 14 14 0.3750 0.4286 0.4286 -21
221 7adu:C 19 16 0.6250 0.5263 0.6250 -21 7adv:C, 4bdy:C, 4bdz:C, 4be0:C, 4be1:C, 4be2:C, 4e7h:C, 4e7i:C, 4e7j:C, 4e7k:C, 4e7l:C, 5frm:C, 5frn:C, 5fro:C, 4ikf:C, 5mma:C, 5mmb:C, 5no1:C, 3os0:C, 3os1:C, 3os2:C, 3oy9:C, 3oya:C, 3oyb:C, 3oyc:C, 3oyd:C, 3oye:C, 3oyf:C, 3oyg:C, 3oyh:C, 3oyi:C, 3oyj:C, 3oyk:C, 3oyl:C, 3oym:C, 3oyn:C, 3s3m:C, 3s3n:C, 3s3o:C, 5uop:C, 5uoq:C, 4ztf:C, 4ztj:C
222 8jks:B 19 16 0.6250 0.5263 0.6250 -21 8jks:F
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[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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