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BioLiP
>dna
agtacttttccuggtcatt

The query sequence (length=19) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 2ja6:T 19 19 1.0000 1.0000 1.0000 38
2 2ja8:T 19 19 0.9474 0.9474 0.9474 33
3 2ja7:2 18 18 0.9474 1.0000 1.0000 21 2ja7:5
4 1o4x:C 19 19 0.5263 0.5263 0.5263 -2
5 6l6q:C 20 19 0.7368 0.7000 0.7368 -2 6l6q:F
6 1y1w:T 19 18 0.7895 0.7895 0.8333 -4
7 4by1:T 24 19 1.0000 0.7917 1.0000 -4
8 1y77:T 19 19 0.5263 0.5263 0.5263 -7
9 9ezy:E 19 19 0.4737 0.4737 0.4737 -7
10 4by7:T 25 19 1.0000 0.7600 1.0000 -8
11 9baq:H 18 18 0.5789 0.6111 0.6111 -9
12 3hou:1 18 17 0.7895 0.8333 0.8824 -10 3hou:4
13 4e7h:D 19 19 0.4737 0.4737 0.4737 -12 4e7i:D
14 5ot2:T 19 19 0.4737 0.4737 0.4737 -12
15 9bdw:D 19 19 0.4211 0.4211 0.4211 -12
16 3po2:T 19 18 0.6316 0.6316 0.6667 -14
17 6xwg:B 21 19 0.5789 0.5238 0.5789 -16
18 7l4m:G 16 16 0.5263 0.6250 0.6250 -16
19 1lli:D 20 19 0.5789 0.5500 0.5789 -17 1lmb:1
20 1srs:W 19 19 0.3684 0.3684 0.3684 -17
21 1zg1:C 20 19 0.5263 0.5000 0.5263 -17 1zg1:H
22 2v6e:D 19 19 0.4211 0.4211 0.4211 -17 2v6e:F
23 3k5m:T 20 19 0.5263 0.5000 0.5263 -17
24 3rn5:L 19 19 0.4211 0.4211 0.4211 -17 3rn5:N
25 5cqq:E 19 19 0.3684 0.3684 0.3684 -17
26 5h9e:M 19 19 0.3684 0.3684 0.3684 -17
27 5j2n:P 19 19 0.4211 0.4211 0.4211 -17
28 5trd:G 19 19 0.4211 0.4211 0.4211 -17
29 6rj9:E 19 19 0.4211 0.4211 0.4211 -17 6rja:E, 6rja:H
30 8t6s:C 20 19 0.5789 0.5500 0.5789 -17
31 9bdu:D 19 19 0.3684 0.3684 0.3684 -17
32 7pu7:P 14 14 0.5789 0.7857 0.7857 -18
33 2w7n:F 18 18 0.3684 0.3889 0.3889 -19 2w7n:H
34 3f2b:T 18 18 0.5263 0.5556 0.5556 -19 3f2c:T, 3f2d:T
35 3rmp:F 13 13 0.5263 0.7692 0.7692 -19 3rmp:H
36 4m6f:C 18 18 0.5263 0.5556 0.5556 -19
37 5ejk:M 18 18 0.4737 0.5000 0.5000 -19 7jn3:I, 7jn3:K, 7ku7:I, 7ku7:K, 7kui:I, 7kui:K
38 5t01:C 18 18 0.4737 0.5000 0.5000 -19
39 6a4b:J 18 18 0.5263 0.5556 0.5556 -19
40 6xeo:B 18 18 0.5263 0.5556 0.5556 -19
41 7l4m:D 18 18 0.4737 0.5000 0.5000 -19
42 7n94:D 18 18 0.5263 0.5556 0.5556 -19
43 7tib:J 18 18 0.5263 0.5556 0.5556 -19 7tid:J
44 7xg2:J 18 18 0.4737 0.5000 0.5000 -19
45 8bd6:C 18 18 0.5263 0.5556 0.5556 -19
46 8r7y:E 18 18 0.4737 0.5000 0.5000 -19 8r7y:H
47 1ej9:D 22 19 0.5789 0.5000 0.5789 -20
48 2p5l:F 17 17 0.4737 0.5294 0.5294 -20
49 3hov:T 17 17 0.5263 0.5882 0.5882 -20
50 4a93:T 23 17 0.8947 0.7391 1.0000 -20
51 4gjp:I 17 17 0.5263 0.5882 0.5882 -20 6jtq:I, 6jtq:C, 6jvz:I, 6jvz:C, 6jw0:I, 6jw0:C, 6jw1:I, 6jw1:C, 6jw2:I, 6jw2:C, 6jw2:F, 6jw2:K, 6jw3:I, 6jw3:C, 6jw3:F, 6jw3:K, 6jw4:I, 6jw4:C, 6jw4:F, 6jw4:K, 6jw5:I, 6jw5:C, 6jw5:F, 6jw5:K, 6lew:I
52 4k96:F 17 17 0.5263 0.5882 0.5882 -20 4k96:H, 4o6a:F
53 7l4f:G 17 17 0.4737 0.5294 0.5294 -20
54 7n94:F 17 17 0.5263 0.5882 0.5882 -20
55 7xfz:G 22 19 0.5789 0.5000 0.5789 -20
56 8byx:D 17 17 0.4737 0.5294 0.5294 -20
57 1ouq:X 21 19 0.5789 0.5238 0.5789 -21 1ouq:Y, 1q3v:X, 1q3v:Y
58 2nvt:T 21 19 0.5789 0.5238 0.5789 -21
59 3n78:C 16 16 0.5263 0.6250 0.6250 -21 3n7b:C
60 4xrs:D 17 17 0.5789 0.6471 0.6471 -21
61 5c4a:S 16 16 0.5263 0.6250 0.6250 -21
62 5h3r:C 21 19 0.5789 0.5238 0.5789 -21
63 7n5w:Y 16 16 0.4737 0.5625 0.5625 -21
64 1dgc:B 19 19 0.3158 0.3158 0.3158 -22 2dgc:B
65 1je8:C 20 19 0.4737 0.4500 0.4737 -22 1je8:D, 1je8:G, 1je8:H
66 1n5y:P 20 19 0.5263 0.5000 0.5263 -22 3v4i:P, 3v4i:F, 3v6d:P, 3v6d:F, 3v81:P, 3v81:F
67 1per:A 20 19 0.4737 0.4500 0.4737 -22
68 2rbf:C 19 19 0.3684 0.3684 0.3684 -22
69 2wty:D 19 19 0.3684 0.3684 0.3684 -22
70 3ei2:H 15 15 0.5263 0.6667 0.6667 -22
71 3foe:F 19 19 0.3684 0.3684 0.3684 -22 3fof:F
72 3pov:C 19 19 0.3684 0.3684 0.3684 -22
73 3us2:E 19 19 0.3684 0.3684 0.3684 -22 3us2:K
74 3us2:F 19 19 0.3684 0.3684 0.3684 -22 3us2:L
75 5ivw:Y 20 19 0.4737 0.4500 0.4737 -22 1z63:D, 1z63:F
76 6a47:C 19 19 0.3684 0.3684 0.3684 -22
77 6cg0:J 19 19 0.3684 0.3684 0.3684 -22 6cij:J
78 6i1l:C 20 19 0.4737 0.4500 0.4737 -22 6i1l:F
79 7n3p:C 20 19 0.5263 0.5000 0.5263 -22
80 7o0g:F 15 15 0.4737 0.6000 0.6000 -22
81 7ogs:C 20 19 0.4737 0.4500 0.4737 -22 7ogs:G
82 7qnz:H 19 19 0.3684 0.3684 0.3684 -22 7qo1:H
83 7sr6:E 20 19 0.5263 0.5000 0.5263 -22
84 7ve5:C 19 19 0.3158 0.3158 0.3158 -22
85 7z4h:D 19 19 0.3684 0.3684 0.3684 -22
86 8kg8:I 20 19 0.4737 0.4500 0.4737 -22
87 8ssu:C 19 19 0.3684 0.3684 0.3684 -22
88 8txo:T 19 19 0.3684 0.3684 0.3684 -22
89 8w09:E 19 19 0.3158 0.3158 0.3158 -22 8w09:N, 8w34:E, 8w34:N
90 9c9m:E 19 19 0.3158 0.3158 0.3158 -22 9c9m:N, 8fn7:E, 8fn7:K, 8fnd:E, 8fnd:K, 8fng:E, 8fng:K, 8fnh:E, 8fnh:K, 8fnj:E, 8fnj:K, 8fnl:E, 8fnl:K, 8fnm:E, 8fnm:K, 8fnn:E, 8fnn:K, 8fno:E, 8fno:K, 8fnp:E, 8fnp:K, 8fnq:E, 8fnq:K, 6puw:E, 6puy:E, 6puz:E, 6v3k:E, 8w2r:E, 8w2r:N
91 1co0:E 20 18 0.6316 0.6000 0.6667 -23
92 1rm1:E 18 18 0.4737 0.5000 0.5000 -24
93 2p5l:B 18 18 0.4211 0.4444 0.4444 -24
94 2w7n:E 18 18 0.4211 0.4444 0.4444 -24 2w7n:G
95 3kk3:P 18 18 0.4737 0.5000 0.5000 -24
96 3kqu:M 18 18 0.4211 0.4444 0.4444 -24 3kqu:N, 5n8o:C, 6vaa:X
97 3ksb:F 18 18 0.4737 0.5000 0.5000 -24
98 3vea:N 23 19 0.5789 0.4783 0.5789 -24
99 4kb1:C 18 18 0.4737 0.5000 0.5000 -24 4kb1:D
100 5hrh:C 18 18 0.4211 0.4444 0.4444 -24 5hrh:F, 5hrk:H, 5hrk:E, 5hrl:C, 5hrl:F
101 5hri:C 18 18 0.4211 0.4444 0.4444 -24 5hri:F
102 5no6:C 18 18 0.4211 0.4444 0.4444 -24 5no6:D
103 6jbx:C 23 19 0.5789 0.4783 0.5789 -24
104 7l4c:C 18 18 0.4211 0.4444 0.4444 -24
105 7l4f:D 18 18 0.4211 0.4444 0.4444 -24
106 7l4h:C 18 18 0.4211 0.4444 0.4444 -24
107 7l4k:C 18 18 0.4737 0.5000 0.5000 -24 7l4n:C
108 7xg0:J 18 18 0.4737 0.5000 0.5000 -24
109 7z9c:H 18 18 0.4211 0.4444 0.4444 -24 7z9g:H, 7z9k:H, 7z9m:H
110 8j54:B 18 18 0.4737 0.5000 0.5000 -24 8j54:P, 7xvn:P, 7xvn:F
111 1a35:D 22 19 0.3684 0.3182 0.3684 -25
112 1a36:C 22 19 0.5263 0.4545 0.5263 -25 2b9s:E, 1r49:C
113 1egw:E 17 17 0.4211 0.4706 0.4706 -25 1egw:H, 3mu6:E, 3mu6:G
114 2v1u:C 22 19 0.5263 0.4545 0.5263 -25
115 3how:1 19 17 0.7895 0.7895 0.8824 -25
116 3hoy:T 19 17 0.7895 0.7895 0.8824 -25
117 3hoz:T 19 17 0.7895 0.7895 0.8824 -25
118 3maq:T 17 17 0.4211 0.4706 0.4706 -25
119 4cn2:A 17 17 0.4737 0.5294 0.5294 -25
120 4gg4:G 17 17 0.4737 0.5294 0.5294 -25 4osi:G, 4osm:G, 4osm:I, 4ost:I, 4osv:G, 4osv:I, 4osw:G, 4osw:I, 4osz:G, 4osz:I, 4ot0:I, 4ot3:I, 4oto:G, 4oto:I, 3v6t:G, 3v6t:I
121 4gjr:I 17 17 0.4737 0.5294 0.5294 -25 4gjr:G
122 4osk:I 17 17 0.4211 0.4706 0.4706 -25
123 4osk:J 17 17 0.4211 0.4706 0.4706 -25 4osk:H
124 4osl:G 17 17 0.4737 0.5294 0.5294 -25 4osl:I, 4osq:G, 4osq:I, 4osr:I, 4oss:I
125 5eax:E 17 17 0.4211 0.4706 0.4706 -25 5eax:H, 8uzt:G
126 5jjv:D 17 17 0.4211 0.4706 0.4706 -25 5jjv:F
127 5jub:X 17 17 0.4737 0.5294 0.5294 -25
128 7pla:C 17 17 0.4737 0.5294 0.5294 -25
129 1dp7:D 16 16 0.4211 0.5000 0.5000 -26
130 1du0:D 21 19 0.5263 0.4762 0.5263 -26 1hdd:B, 3hdd:D
131 1ea4:V 21 19 0.4737 0.4286 0.4737 -26 1ea4:Z
132 1k4t:D 22 19 0.6842 0.5909 0.6842 -26 1lpq:C, 1rr8:B, 1rrj:C, 1sc7:D, 1seu:D, 1t8i:D
133 1nh3:D 22 19 0.3684 0.3182 0.3684 -26
134 3jtg:B 16 16 0.4211 0.5000 0.5000 -26
135 3klh:F 21 19 0.5263 0.4762 0.5263 -26
136 3m9e:C 22 19 0.6316 0.5455 0.6316 -26 3m9e:D, 3m9e:G, 3m9e:H
137 3mq6:P 16 16 0.4737 0.5625 0.5625 -26
138 3mzh:C 21 19 0.5263 0.4762 0.5263 -26
139 3n78:D 16 16 0.4737 0.5625 0.5625 -26 3n7b:D
140 4a3j:T 16 16 0.3684 0.4375 0.4375 -26
141 4aij:C 21 19 0.4737 0.4286 0.4737 -26
142 4egy:U 21 19 0.4737 0.4286 0.4737 -26
143 4fyd:C 16 16 0.4211 0.5000 0.5000 -26 4fyd:D
144 4lg0:C 21 19 0.5263 0.4762 0.5263 -26
145 4s2q:A 16 16 0.4211 0.5000 0.5000 -26
146 5m1s:T 22 19 0.6316 0.5455 0.6316 -26
147 5zmc:D 16 16 0.4737 0.5625 0.5625 -26
148 6bse:D 16 16 0.4211 0.5000 0.5000 -26
149 6g1l:B 16 16 0.4737 0.5625 0.5625 -26
150 6p4f:F 22 19 0.6316 0.5455 0.6316 -26
151 6rax:X 21 19 0.4737 0.4286 0.4737 -26
152 7n5u:Y 16 16 0.4211 0.5000 0.5000 -26 7n5v:Y, 7n5v:I, 7n5v:E
153 7ol9:C 16 16 0.4737 0.5625 0.5625 -26 7ol9:D
154 7owf:C 16 16 0.4211 0.5000 0.5000 -26
155 7yzd:B 16 16 0.4211 0.5000 0.5000 -26 7yze:B
156 7z4k:D 21 19 0.4737 0.4286 0.4737 -26
157 8k21:U 21 19 0.4737 0.4286 0.4737 -26 8k22:U, 8k23:U, 8k24:U
158 8uvx:C 21 19 0.5263 0.4762 0.5263 -26
159 1flo:J 19 19 0.3158 0.3158 0.3158 -27 1flo:L, 1m6x:I
160 1fos:B 20 19 0.4211 0.4000 0.4211 -27 1fos:D
161 1nkp:F 19 19 0.2632 0.2632 0.2632 -27 1nkp:G, 1nkp:H, 1nkp:J
162 1r0a:P 20 19 0.4737 0.4500 0.4737 -27
163 1tk8:T 20 19 0.4737 0.4500 0.4737 -27
164 1tro:I 19 19 0.3158 0.3158 0.3158 -27 1tro:J, 1tro:K, 1tro:L
165 1z19:D 20 19 0.4211 0.4000 0.4211 -27
166 2asd:J 19 19 0.3158 0.3158 0.3158 -27 2atl:J, 3gii:E, 3khg:E, 3rb0:E, 3rb3:E
167 2hap:A 20 19 0.4737 0.4500 0.4737 -27 1qp9:E, 1qp9:G
168 2ief:E 19 19 0.3158 0.3158 0.3158 -27
169 2q2k:F 20 19 0.3158 0.3000 0.3158 -27
170 2vy1:W 20 19 0.4211 0.4000 0.4211 -27
171 3bdn:C 19 19 0.3158 0.3158 0.3158 -27 7jvt:E
172 3bdn:D 19 19 0.3158 0.3158 0.3158 -27 7jvt:F
173 3bs1:C 16 16 0.4737 0.5625 0.5625 -27
174 3c2p:D 19 19 0.3158 0.3158 0.3158 -27
175 3dfx:Y 20 19 0.4211 0.4000 0.4211 -27
176 3klf:D 20 19 0.4737 0.4500 0.4737 -27 3klf:H, 3klf:L, 3klf:P, 1t03:P
177 3kmp:C 15 15 0.4211 0.5333 0.5333 -27 5x6g:C
178 3pt6:C 19 19 0.2632 0.2632 0.2632 -27 3pt6:D, 3pta:B
179 3rb4:E 19 19 0.3158 0.3158 0.3158 -27 3rb6:E, 3rbd:E, 3rbe:E
180 3s8q:C 19 19 0.3158 0.3158 0.3158 -27
181 3t79:F 15 15 0.4737 0.6000 0.6000 -27
182 4e0g:D 19 19 0.2632 0.2632 0.2632 -27 4e0j:D
183 4f6m:E 19 19 0.3158 0.3158 0.3158 -27 2lt7:E
184 4gnx:L 20 19 0.4211 0.4000 0.4211 -27 4gop:L, 6i52:D
185 4osh:G 15 15 0.4737 0.6000 0.6000 -27
186 4xyq:C 16 16 0.5263 0.6250 0.6250 -27
187 5edn:E 19 19 0.3158 0.3158 0.3158 -27 5edn:F, 5edn:I, 5edn:L
188 5x22:G 19 19 0.3158 0.3158 0.3158 -27 5x22:Q
189 5yeg:D 20 19 0.4211 0.4000 0.4211 -27 5yeg:E
190 6a47:D 19 19 0.3158 0.3158 0.3158 -27
191 6a4b:G 15 15 0.4737 0.6000 0.6000 -27 6a4b:H, 6a4b:I, 6a4b:L
192 6cro:R 20 19 0.4737 0.4500 0.4737 -27
193 6cro:U 20 19 0.4737 0.4500 0.4737 -27
194 6fqm:E 19 19 0.3158 0.3158 0.3158 -27 6fqm:e
195 6h8q:F 19 19 0.3158 0.3158 0.3158 -27
196 6kks:B 19 19 0.3158 0.3158 0.3158 -27
197 6ovr:H 19 19 0.3158 0.3158 0.3158 -27 5vo8:H
198 6oy7:H 20 19 0.4211 0.4000 0.4211 -27
199 6qx2:v 19 19 0.3158 0.3158 0.3158 -27
200 6s6h:C 20 19 0.4211 0.4000 0.4211 -27 6s6h:D
201 7ahx:P 20 19 0.4737 0.4500 0.4737 -27 7ahx:F, 7aid:P, 7aid:F, 7aif:P, 7aif:F, 7aig:P, 7aig:F, 7aii:P, 7aii:F, 7aij:P, 7aij:F, 6amo:P, 6amo:F, 6an2:P, 6an2:F, 6an8:P, 6an8:F, 6anq:P, 6anq:F, 6asw:P, 6asw:F, 6avm:P, 6avm:F, 6avt:P, 6avt:F, 3jsm:P, 3jyt:P, 7ot6:F, 7ot6:P, 7ota:F, 7ota:P, 7otk:F, 7otk:P, 7otn:F, 7otn:P, 7otx:F, 7otx:P, 7otz:F, 7otz:P, 7out:F, 7out:P, 7oxq:F, 7oz5:F, 4r5p:P, 4r5p:F, 1t05:P, 5txl:P, 5txl:F, 5txm:P, 5txm:F, 5txn:P, 5txn:F, 5txo:P, 5txo:F, 5txp:P, 5txp:F
202 7q5b:t 19 19 0.3158 0.3158 0.3158 -27 7q5b:u
203 7sr6:I 20 19 0.4737 0.4500 0.4737 -27
204 7tqq:D 15 15 0.4737 0.6000 0.6000 -27
205 7ve5:D 19 19 0.2632 0.2632 0.2632 -27
206 7z4d:H 19 19 0.3158 0.3158 0.3158 -27
207 8g5j:P 19 19 0.3158 0.3158 0.3158 -27
208 8g5l:T 19 19 0.3158 0.3158 0.3158 -27
209 8kg9:I 15 15 0.4211 0.5333 0.5333 -27
210 8sfi:D 20 19 0.4211 0.4000 0.4211 -27
211 8spq:E 19 19 0.2632 0.2632 0.2632 -27 8sqh:c, 8srs:c
212 8svd:D 19 19 0.3158 0.3158 0.3158 -27 8svd:Q
213 8xmc:N 19 19 0.3158 0.3158 0.3158 -27
214 8xri:H 19 19 0.3158 0.3158 0.3158 -27
215 9bct:5 20 19 0.4737 0.4500 0.4737 -27 9bcu:5
216 9ceu:N 15 15 0.4737 0.6000 0.6000 -27 9cev:N, 9cew:N, 9cex:N, 8gkh:N
217 1k79:C 15 15 0.5789 0.7333 0.7333 -28 1k79:F
218 1rcs:E 20 18 0.5789 0.5500 0.6111 -28 1rcs:F
219 2ezv:G 15 15 0.5263 0.6667 0.6667 -28
220 3brd:C 15 15 0.5789 0.7333 0.7333 -28 3brf:C, 3brg:A, 6dks:A, 6dks:E, 5e24:G, 5eg6:B, 2fo1:C, 4j2x:E, 4j2x:G, 1ttu:C
221 5z00:A 15 15 0.5263 0.6667 0.6667 -28 5z00:E, 5z00:I
222 6ml5:E 20 18 0.5789 0.5500 0.6111 -28 6ml6:E, 6ml7:E
223 8udk:E 14 14 0.4737 0.6429 0.6429 -28
224 1bf5:C 18 18 0.4211 0.4444 0.4444 -29
225 1bg1:B 18 18 0.4211 0.4444 0.4444 -29 4e68:B, 6qhd:D
226 1c9b:D 18 18 0.4211 0.4444 0.4444 -29 1c9b:H, 1c9b:L, 1c9b:P, 1c9b:T
227 1jfi:E 18 18 0.3684 0.3889 0.3889 -29
228 1kb6:D 18 18 0.4211 0.4444 0.4444 -29
229 1r4i:D 18 18 0.3684 0.3889 0.3889 -29
230 1ynw:D 18 18 0.3684 0.3889 0.3889 -29
231 2f8x:Y 18 18 0.4211 0.4444 0.4444 -29 3v79:Y
232 2hmi:F 18 18 0.4211 0.4444 0.4444 -29 1j5o:P
233 2nl8:W 18 18 0.3684 0.3889 0.3889 -29
234 2nll:C 18 18 0.4211 0.4444 0.4444 -29
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991 7bhy:E 15 15 0.3684 0.4667 0.4667 -37
992 7cpw:a 20 19 0.3684 0.3500 0.3684 -37 7cpw:b
993 7eof:C 16 16 0.4211 0.5000 0.5000 -37
994 7f4y:S 19 19 0.2105 0.2105 0.2105 -37
995 7jm4:D 19 19 0.2105 0.2105 0.2105 -37 7jm4:C, 7rh2:C, 7rh2:D
996 7jm4:E 19 19 0.1579 0.1579 0.1579 -37 7jm4:F, 7rh2:E
997 7kle:T 19 19 0.2105 0.2105 0.2105 -37 7klf:T
998 7kqm:C 15 15 0.3158 0.4000 0.4000 -37
999 7mlj:G 15 15 0.3158 0.4000 0.4000 -37
1000 7mtl:C 15 15 0.3684 0.4667 0.4667 -37

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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