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BioLiP
>dna
agatatatctacgtttaacagtggccttattaaatgacttctccatgatctac

The query sequence (length=53) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ff5:N 53 53 1.0000 1.0000 1.0000 9.44e-24
2 8ff4:N 85 53 1.0000 0.6235 1.0000 9.44e-24
3 8fcu:N 63 53 1.0000 0.8413 1.0000 9.44e-24
4 8fcj:N 38 38 0.7170 1.0000 1.0000 2.06e-15
5 8rdu:3 98 40 0.7358 0.3980 0.9750 2.66e-14
6 8bd5:C 41 32 0.6038 0.7805 1.0000 4.46e-12
7 8yha:T 47 31 0.5849 0.6596 1.0000 1.60e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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