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BioLiP
>dna
acttgacatcccacctcacgtatgctataatgtgtgcagtctgacgcgg

The query sequence (length=49) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yln:1 49 49 1.0000 1.0000 1.0000 1.41e-21 4yln:4, 4yln:7
2 6b6h:1 88 48 0.9796 0.5455 1.0000 5.08e-21
3 4ylo:1 49 49 0.9796 0.9796 0.9796 2.37e-19 4ylo:4, 4ylo:7, 4ylp:1, 4ylp:4, 4ylp:7
4 4yln:2 49 50 0.9184 0.9184 0.9000 3.08e-13 4yln:5, 4yln:8
5 5ipl:1 33 33 0.6735 1.0000 1.0000 1.11e-12 5ipm:1, 5ipn:1, 6utw:111
6 6b6h:2 88 49 0.8980 0.5000 0.8980 1.11e-12
7 6utx:111 32 32 0.6531 1.0000 1.0000 3.99e-12 6uty:111, 6uua:111, 6uub:111
8 6pb4:1 78 29 0.5918 0.3718 1.0000 1.85e-10 6pb5:1, 6pb6:1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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