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BioLiP
>dna
aataaatggaagtggg

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 8ekj:C 16 16 1.0000 1.0000 1.0000 32
2 8eqg:C 16 16 0.9375 0.9375 0.9375 32
3 8e3r:C 16 16 0.9375 0.9375 0.9375 27 8ej8:C
4 8e3k:C 16 16 0.8750 0.8750 0.8750 22 8e5y:C, 8emd:C, 8eng:C, 8eo1:C, 8eo4:C, 8smh:C, 8sp1:C, 8t9u:C
5 8e4h:C 16 16 0.8750 0.8750 0.8750 22 8vdi:C
6 8eku:C 16 16 0.8750 0.8750 0.8750 22
7 8eqk:C 16 16 0.8750 0.8750 0.8750 22 8eql:C
8 8vdh:C 16 16 0.8750 0.8750 0.8750 22
9 1pue:A 16 16 0.8125 0.8125 0.8125 17 1pue:C
10 8ee9:C 16 16 0.8125 0.8125 0.8125 17
11 8ekv:C 16 16 0.8125 0.8125 0.8125 17
12 8ebh:C 16 16 0.7500 0.7500 0.7500 12 8ek3:C, 8smj:C
13 8ej6:C 16 16 0.7500 0.7500 0.7500 12
14 8ek8:C 16 16 0.7500 0.7500 0.7500 12
15 8ekz:C 16 16 0.7500 0.7500 0.7500 12
16 4fbt:T 16 16 0.5625 0.5625 0.5625 -3
17 6blw:B 16 16 0.5625 0.5625 0.5625 -3
18 8cyf:C 16 16 0.5625 0.5625 0.5625 -3
19 8em9:C 16 16 0.5625 0.5625 0.5625 -3
20 3ei2:G 15 15 0.6875 0.7333 0.7333 -5
21 8e66:B 15 15 0.6875 0.7333 0.7333 -5 8e66:D
22 8ek8:A 15 15 0.6875 0.7333 0.7333 -5
23 1cit:B 16 16 0.5000 0.5000 0.5000 -8 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
24 3g6t:C 16 16 0.5000 0.5000 0.5000 -8
25 4q5s:H 16 16 0.5000 0.5000 0.5000 -8
26 6ryd:C 16 16 0.5000 0.5000 0.5000 -8 6ryd:G
27 7yi2:G 16 16 0.5000 0.5000 0.5000 -8
28 7z5a:E 16 16 0.5000 0.5000 0.5000 -8
29 4lvi:C 15 15 0.6250 0.6667 0.6667 -10 4lvj:C
30 6xnz:M 15 15 0.6250 0.6667 0.6667 -10
31 8e67:B 15 15 0.6250 0.6667 0.6667 -10 8e67:D, 8e67:J
32 4mhg:B 14 14 0.6250 0.7143 0.7143 -11
33 1drg:B 16 16 0.4375 0.4375 0.4375 -13 1f44:M
34 1lq1:F 16 16 0.4375 0.4375 0.4375 -13 1lq1:H
35 2e42:D 16 16 0.4375 0.4375 0.4375 -13 2e43:D, 1gu4:D
36 2fvs:B 16 16 0.4375 0.4375 0.4375 -13
37 2kdz:B 16 16 0.4375 0.4375 0.4375 -13 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
38 2kmk:B 16 16 0.4375 0.4375 0.4375 -13
39 3bs1:C 16 16 0.3750 0.3750 0.3750 -13
40 3fyl:C 16 16 0.4375 0.4375 0.4375 -13 3g9m:C, 3g9o:D, 3g9p:D
41 3g6q:C 16 16 0.4375 0.4375 0.4375 -13 3g6u:D
42 3jtg:C 16 16 0.4375 0.4375 0.4375 -13
43 3rma:I 17 16 0.6250 0.5882 0.6250 -13
44 4qtr:F 16 16 0.4375 0.4375 0.4375 -13 4qtr:H
45 4s2q:B 16 16 0.4375 0.4375 0.4375 -13
46 4v8s:BS 16 16 0.4375 0.4375 0.4375 -13
47 4xyq:C 16 16 0.4375 0.4375 0.4375 -13
48 5c4a:S 16 16 0.4375 0.4375 0.4375 -13
49 6bqu:C 16 16 0.4375 0.4375 0.4375 -13 6bsf:C
50 6bse:C 16 16 0.4375 0.4375 0.4375 -13
51 6ct9:C 16 16 0.4375 0.4375 0.4375 -13 6cta:C, 7ftn:B
52 6ish:D 16 16 0.4375 0.4375 0.4375 -13
53 6ovy:H 16 16 0.4375 0.4375 0.4375 -13
54 6p71:H 16 16 0.4375 0.4375 0.4375 -13
55 7k0y:G 16 16 0.4375 0.4375 0.4375 -13 7k19:G, 7k1b:G, 7k1k:G, 7k1n:G, 7su3:G
56 7n5w:X 16 16 0.4375 0.4375 0.4375 -13
57 7txc:A 16 16 0.4375 0.4375 0.4375 -13
58 7yq8:D 16 16 0.4375 0.4375 0.4375 -13
59 7yzg:B 16 16 0.4375 0.4375 0.4375 -13
60 7zus:DDD 16 16 0.4375 0.4375 0.4375 -13 7zus:FFF, 7zus:HHH, 7zx0:GGG, 7zx0:III, 7zx0:KKK, 7zx0:MMM, 7zx0:OOO, 7zx0:QQQ, 7zx1:GGG, 7zx1:III, 7zx1:KKK, 7zx1:MMM, 7zx1:OOO, 7zx1:QQQ
61 7zwa:E 16 16 0.4375 0.4375 0.4375 -13
62 8w8n:G 16 16 0.4375 0.4375 0.4375 -13
63 9bvd:G 16 16 0.4375 0.4375 0.4375 -13
64 9cex:A 16 16 0.4375 0.4375 0.4375 -13 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
65 1kqq:B 15 15 0.5625 0.6000 0.6000 -15
66 6ido:C 15 15 0.5625 0.6000 0.6000 -15 6ido:E
67 8tlq:T 15 15 0.5625 0.6000 0.6000 -15 8tlt:T, 6v93:T
68 4fbu:T 14 14 0.5625 0.6429 0.6429 -16 4fbu:C, 4rzr:B
69 7s0t:T 14 14 0.5625 0.6429 0.6429 -16
70 1ig7:B 13 13 0.5625 0.6923 0.6923 -17
71 7kuf:C 18 16 0.6250 0.5556 0.6250 -17
72 7ut1:k 14 14 0.6875 0.7857 0.7857 -17 7ut1:K
73 7z2z:S 18 16 0.6250 0.5556 0.6250 -17
74 8ftj:F 13 13 0.5625 0.6923 0.6923 -17
75 9baq:G 18 16 0.6250 0.5556 0.6250 -17
76 1cdw:B 16 16 0.3750 0.3750 0.3750 -18
77 1ckt:B 16 16 0.3125 0.3125 0.3125 -18
78 1gtw:C 16 16 0.3750 0.3750 0.3750 -18
79 1hjc:B 16 16 0.3750 0.3750 0.3750 -18 1hjc:E
80 1iaw:C 16 16 0.3750 0.3750 0.3750 -18
81 1lq1:E 16 16 0.3750 0.3750 0.3750 -18 1lq1:G
82 2fvp:B 16 16 0.3750 0.3750 0.3750 -18
83 2fvq:B 16 16 0.3750 0.3750 0.3750 -18
84 2kdz:C 16 16 0.3750 0.3750 0.3750 -18 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
85 2kmk:C 16 16 0.3750 0.3750 0.3750 -18
86 2wt7:C 16 16 0.3750 0.3750 0.3750 -18
87 3g6q:D 16 16 0.3750 0.3750 0.3750 -18 3g6u:C
88 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
89 3g99:C 16 16 0.3750 0.3750 0.3750 -18 3g9i:C
90 3g99:D 16 16 0.3750 0.3750 0.3750 -18 3g9i:D
91 3l8b:C 16 16 0.3750 0.3750 0.3750 -18 3l8b:E
92 3oa6:C 16 16 0.3750 0.3750 0.3750 -18
93 4e0p:D 16 16 0.3750 0.3750 0.3750 -18 4e0y:D, 4e0z:D
94 4fjl:T 16 16 0.3750 0.3750 0.3750 -18 4fjn:T
95 4lvk:C 16 16 0.3750 0.3750 0.3750 -18 4lvm:E
96 4lvl:C 16 16 0.3750 0.3750 0.3750 -18
97 4m3y:T 16 16 0.3750 0.3750 0.3750 -18
98 4osh:J 16 16 0.3750 0.3750 0.3750 -18 4osj:J
99 4osj:H 16 16 0.3750 0.3750 0.3750 -18 4osr:H, 4ost:H, 4ot0:H, 4ot3:H
100 4qtr:G 16 16 0.3750 0.3750 0.3750 -18
101 4xrs:L 16 16 0.3750 0.3750 0.3750 -18
102 5d4d:G 16 16 0.3750 0.3750 0.3750 -18 5d4d:R, 5d4e:G, 5d4e:R
103 5db7:T 16 16 0.3750 0.3750 0.3750 -18 5dba:T
104 5hhh:T 16 16 0.3750 0.3750 0.3750 -18 5hhi:T
105 5iud:E 16 16 0.3750 0.3750 0.3750 -18
106 5k7z:E 16 16 0.3750 0.3750 0.3750 -18 5k7z:F
107 5m0r:U 16 16 0.3750 0.3750 0.3750 -18 5m0r:V
108 5uh5:G 16 16 0.3750 0.3750 0.3750 -18
109 5uh8:G 16 16 0.3750 0.3750 0.3750 -18
110 5ux0:F 16 16 0.3750 0.3750 0.3750 -18
111 6ako:A 16 16 0.3750 0.3750 0.3750 -18 7cby:B, 3co7:B, 3co7:E, 5x07:E, 5x07:B, 5x07:H, 5x07:K
112 6bqu:D 16 16 0.3750 0.3750 0.3750 -18 6bsf:D
113 6bse:D 16 16 0.3750 0.3750 0.3750 -18
114 6e3r:T 16 16 0.3750 0.3750 0.3750 -18 6e3v:T, 6e3w:T, 6e3x:T, 5j0w:T, 5j0x:T, 5j0y:T, 5j2i:T, 5j2j:T, 5j2k:T, 7mz0:T, 7mz1:T, 7mz3:T, 7mz4:T, 4pha:T, 4phd:T, 6pkz:T
115 6isg:D 16 16 0.3750 0.3750 0.3750 -18
116 6mg1:C 16 16 0.3750 0.3750 0.3750 -18 6mg1:D, 6mg2:C, 6mg2:D, 6mg3:C, 6mg3:D
117 6nce:C 16 16 0.3750 0.3750 0.3750 -18
118 6o8g:E 16 16 0.3750 0.3750 0.3750 -18 6o8g:I
119 6py8:D 16 16 0.3750 0.3750 0.3750 -18 6py8:Y
120 6usp:E 16 16 0.3750 0.3750 0.3750 -18
121 6xnx:M 16 16 0.3750 0.3750 0.3750 -18 6xny:M
122 7n5u:X 16 16 0.3750 0.3750 0.3750 -18
123 7riw:N 16 16 0.3750 0.3750 0.3750 -18
124 7sba:X 16 16 0.3750 0.3750 0.3750 -18
125 7upz:C 16 16 0.3750 0.3750 0.3750 -18
126 7vou:A 16 16 0.3750 0.3750 0.3750 -18
127 7vou:B 16 16 0.3750 0.3750 0.3750 -18
128 7vov:C 16 16 0.3750 0.3750 0.3750 -18 7vox:E, 7vox:G
129 7yz7:B 16 16 0.3750 0.3750 0.3750 -18
130 7yzb:B 16 16 0.3750 0.3750 0.3750 -18
131 8bd4:U 16 16 0.3750 0.3750 0.3750 -18
132 8ilw:B 16 16 0.3750 0.3750 0.3750 -18
133 1awc:D 21 16 0.6875 0.5238 0.6875 -19
134 1tf3:E 15 15 0.5000 0.5333 0.5333 -20
135 4e10:D 15 15 0.3750 0.4000 0.4000 -20
136 4osh:H 15 15 0.5000 0.5333 0.5333 -20
137 5z00:F 15 15 0.5000 0.5333 0.5333 -20
138 6j9a:C 15 15 0.5000 0.5333 0.5333 -20 6j9b:C, 6j9b:F
139 7zyg:E 15 15 0.5000 0.5333 0.5333 -20
140 8k8s:F 15 15 0.5000 0.5333 0.5333 -20 8k8u:F
141 1fjl:D 14 14 0.5000 0.5714 0.5714 -21
142 1qn7:C 14 14 0.5000 0.5714 0.5714 -21 1qn7:E
143 2etw:C 14 14 0.5000 0.5714 0.5714 -21
144 2euw:C 14 14 0.5000 0.5714 0.5714 -21
145 2evg:C 14 14 0.5000 0.5714 0.5714 -21
146 2evi:C 14 14 0.5000 0.5714 0.5714 -21
147 2ve9:I 14 14 0.5000 0.5714 0.5714 -21 2ve9:K
148 3bep:D 14 14 0.5000 0.5714 0.5714 -21
149 4a0b:G 14 14 0.5000 0.5714 0.5714 -21
150 5cqq:D 19 16 0.6250 0.5263 0.6250 -21 5cqq:F
151 5uhd:G 14 14 0.5000 0.5714 0.5714 -21
152 6ir8:B 14 14 0.5000 0.5714 0.5714 -21
153 6ovr:H 19 16 0.6250 0.5263 0.6250 -21 5vo8:H
154 6z8x:B 14 14 0.5000 0.5714 0.5714 -21
155 7pu7:T 19 16 0.6250 0.5263 0.6250 -21
156 7z4j:D 14 14 0.5000 0.5714 0.5714 -21
157 8hcm:B 14 14 0.5000 0.5714 0.5714 -21
158 9bdu:C 19 16 0.6250 0.5263 0.6250 -21
159 1skr:T 13 13 0.5000 0.6154 0.6154 -22
160 1t7p:T 13 13 0.5000 0.6154 0.6154 -22
161 2c9l:B 18 16 0.5625 0.5000 0.5625 -22
162 2p5l:A 18 16 0.5625 0.5000 0.5625 -22 2p5l:E
163 3gil:D 13 13 0.5000 0.6154 0.6154 -22 3gil:H, 3rax:D, 3rax:H, 3rbe:D
164 3gim:D 13 13 0.5000 0.6154 0.6154 -22 3rb0:D, 3rb4:D
165 3ksb:E 18 16 0.5625 0.5000 0.5625 -22
166 4nqa:F 18 16 0.5625 0.5000 0.5625 -22 4nqa:M
167 4rul:B 13 13 0.5000 0.6154 0.6154 -22
168 4rzr:E 18 16 0.5625 0.5000 0.5625 -22
169 5d4c:S 18 16 0.5625 0.5000 0.5625 -22
170 5itu:E 13 13 0.5000 0.6154 0.6154 -22 5itu:G, 5itu:I, 6lwa:C, 6lwa:F, 6lwa:I, 6lwb:C, 6lwb:F, 6lwb:I, 6lwc:C, 6lwc:F, 6lwd:C, 6lwd:F, 6lwd:I, 6lwf:C, 6lwf:F, 6lwg:C, 6lwg:F, 6lwg:I, 6lwh:C, 6lwh:F, 6lwh:I, 6lwi:C, 6lwi:F, 6lwi:I, 6lwj:C, 6lwj:F, 6lwj:I, 6lwk:C, 6lwk:F, 6lwk:I, 6lwl:C, 6lwl:F, 6lwl:I, 6lwm:C, 6lwm:F, 6lwm:I, 6lwn:C, 6lwn:F, 6lwn:I, 6lwo:C, 6lwo:F, 6lwo:I, 6lwp:C, 6lwp:F, 6lwp:I, 6lwq:C, 6lwq:F, 6lwq:I, 6lwr:D, 6lwr:H
171 5zux:B 18 16 0.5625 0.5000 0.5625 -22 5zux:C
172 6voy:K 18 16 0.5625 0.5000 0.5625 -22 6voy:N
173 7b0h:A 13 13 0.5000 0.6154 0.6154 -22 7b0h:C
174 7s01:N 13 13 0.5000 0.6154 0.6154 -22
175 7z4i:D 13 13 0.5000 0.6154 0.6154 -22
176 7zko:A 13 13 0.5000 0.6154 0.6154 -22
177 8e67:G 13 13 0.5000 0.6154 0.6154 -22
178 8spo:D 18 16 0.5625 0.5000 0.5625 -22
179 8t1u:G 18 16 0.5625 0.5000 0.5625 -22
180 1ckt:C 16 16 0.3125 0.3125 0.3125 -23
181 1dct:G 16 16 0.3125 0.3125 0.3125 -23
182 1g2d:A 16 16 0.3125 0.3125 0.3125 -23 1g2d:D, 1g2f:A, 1g2f:D
183 1g4d:B 16 16 0.3125 0.3125 0.3125 -23
184 1g4d:C 16 16 0.3125 0.3125 0.3125 -23
185 1hjc:C 16 16 0.3125 0.3125 0.3125 -23 1hjc:F
186 1jh9:B 17 16 0.5000 0.4706 0.5000 -23 1pnr:B, 1wet:B
187 1l3v:C 16 16 0.3125 0.3125 0.3125 -23 3tar:C
188 1nh2:F 16 16 0.3125 0.3125 0.3125 -23 1ytf:F
189 1qp9:H 17 16 0.5000 0.4706 0.5000 -23
190 1zrf:Y 16 16 0.3125 0.3125 0.3125 -23
191 1zvv:O 16 16 0.3125 0.3125 0.3125 -23 1zvv:T, 1zvv:R
192 2dy4:E 17 16 0.5000 0.4706 0.5000 -23
193 2gat:C 16 16 0.3125 0.3125 0.3125 -23 3gat:C
194 2ia6:F 16 16 0.3125 0.3125 0.3125 -23
195 2oyq:E 16 16 0.3125 0.3125 0.3125 -23
196 2stt:B 17 16 0.5000 0.4706 0.5000 -23 2stw:B
197 2z33:B 16 16 0.3125 0.3125 0.3125 -23
198 3bs1:B 16 16 0.3125 0.3125 0.3125 -23
199 3f73:C 16 16 0.3125 0.3125 0.3125 -23
200 3g6t:D 16 16 0.3125 0.3125 0.3125 -23
201 3g8u:D 16 16 0.3125 0.3125 0.3125 -23 3g8x:D, 3g97:C
202 3hm9:X 16 16 0.3125 0.3125 0.3125 -23 3hvr:C, 3hvr:M, 4kpy:C, 4kpy:E, 4n41:E, 4nca:C, 4nca:E, 4ncb:C
203 3mq6:P 16 16 0.3125 0.3125 0.3125 -23
204 3n78:C 16 16 0.3125 0.3125 0.3125 -23 3n7b:C
205 3oqo:B 16 16 0.3125 0.3125 0.3125 -23 1rzr:H, 1rzr:E
206 3pw7:B 16 16 0.3125 0.3125 0.3125 -23 3pw7:F
207 3rnu:K 16 16 0.3125 0.3125 0.3125 -23
208 3spz:T 16 16 0.3125 0.3125 0.3125 -23
209 3sq2:T 16 16 0.3125 0.3125 0.3125 -23 3sun:T, 3suq:T
210 4atk:C 16 16 0.3125 0.3125 0.3125 -23 4atk:D, 5eyo:B, 5eyo:D
211 4dfj:C 16 16 0.3125 0.3125 0.3125 -23 4dfk:C, 5e41:C, 4elt:C, 3m8r:C, 3m8s:C, 3ojs:C
212 4fjk:T 16 16 0.3125 0.3125 0.3125 -23
213 4gjp:H 16 16 0.3125 0.3125 0.3125 -23 6lew:J, 6lew:D
214 4m3r:T 16 16 0.3125 0.3125 0.3125 -23
215 4m42:T 17 16 0.5000 0.4706 0.5000 -23
216 4m45:T 16 16 0.3125 0.3125 0.3125 -23
217 4oss:H 16 16 0.3125 0.3125 0.3125 -23
218 4p0p:E 16 16 0.3125 0.3125 0.3125 -23
219 4xyq:B 16 16 0.3125 0.3125 0.3125 -23
220 5cc0:C 16 16 0.3125 0.3125 0.3125 -23 4hn5:C, 4hn6:C
221 5db8:T 16 16 0.3125 0.3125 0.3125 -23 5dbb:T
222 5db9:T 16 16 0.3125 0.3125 0.3125 -23 5dbc:T
223 5gq9:C 16 16 0.3125 0.3125 0.3125 -23 5gq9:E
224 5gq9:D 16 16 0.3125 0.3125 0.3125 -23 5gq9:F, 5xou:D, 5xou:F, 5xq2:Y, 5xq2:F
225 5hp4:X 17 16 0.5000 0.4706 0.5000 -23
226 5j0o:T 16 16 0.3125 0.3125 0.3125 -23 5j0p:T, 5j0q:T, 5j29:T, 5j2a:T, 5j2b:T
227 5j0r:T 16 16 0.3125 0.3125 0.3125 -23 5j0s:T, 5j2c:T, 5j2d:T, 5j2e:T
228 5jub:Z 17 16 0.5000 0.4706 0.5000 -23
229 5m1s:P 17 16 0.5000 0.4706 0.5000 -23
230 5nnx:F 18 16 0.6875 0.6111 0.6875 -23
231 5va7:C 16 16 0.3125 0.3125 0.3125 -23
232 5vrw:T 16 16 0.3125 0.3125 0.3125 -23 5vrx:T, 5vry:T, 5vrz:T, 5vs0:T, 5vs1:T, 5vs2:T, 5vs3:T, 5vs4:T
233 5z7d:J 16 16 0.3125 0.3125 0.3125 -23 5z7d:L
234 6ako:B 16 16 0.3125 0.3125 0.3125 -23 7cby:A, 3co7:A, 3co7:D, 5x07:D, 5x07:A, 5x07:G, 5x07:J
235 6b1s:E 16 16 0.3125 0.3125 0.3125 -23 6b1s:F
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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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