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BioLiP
>dna
aagtcgaccggtggat

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 3dpg:D 16 16 1.0000 1.0000 1.0000 32
2 3dpg:C 17 16 1.0000 0.9412 1.0000 17
3 3mq6:L 17 16 0.9375 0.8824 0.9375 12 3mq6:K, 3mq6:N, 3mq6:M, 3mq6:O, 3mq6:R, 3mq6:Q
4 3dvo:E 18 16 0.8125 0.7222 0.8125 -2 3dvo:F, 3dvo:G, 3dvo:H, 3dw9:E, 3dw9:F
5 3w6v:C 16 16 0.5625 0.5625 0.5625 -3
6 4df8:C 16 16 0.5625 0.5625 0.5625 -3 5szt:C, 5yte:C
7 4dfm:C 16 16 0.5625 0.5625 0.5625 -3 4elu:C, 5o7t:C, 5oxj:C, 3rtv:C
8 5cc0:D 16 16 0.5625 0.5625 0.5625 -3 4hn5:D, 4hn6:D
9 3mq6:P 16 15 0.8750 0.8750 0.9333 -5
10 2f5n:B 14 14 0.6875 0.7857 0.7857 -6 3sar:C, 6tc9:B, 6tc9:F
11 4zsf:B 14 14 0.6875 0.7857 0.7857 -6
12 2aq4:T 16 16 0.5000 0.5000 0.5000 -8 3bjy:T, 3gqc:F, 3gqc:H, 3gqc:J, 3gqc:L, 3iay:T
13 3osp:T 16 16 0.5000 0.5000 0.5000 -8
14 4dfj:C 16 16 0.5000 0.5000 0.5000 -8 4dfk:C, 5e41:C, 4elt:C, 3m8r:C, 3m8s:C, 3ojs:C
15 4dfp:C 16 16 0.5000 0.5000 0.5000 -8 5nkl:C, 3syz:C, 5ytc:C, 5ytd:C
16 4dle:C 16 16 0.5000 0.5000 0.5000 -8
17 4qw8:D 16 16 0.5000 0.5000 0.5000 -8 4qw9:D, 4qwa:D, 4qwd:D, 4qwe:D
18 6fbd:C 16 16 0.5000 0.5000 0.5000 -8
19 6q4t:T 16 16 0.5000 0.5000 0.5000 -8 6q4u:C, 6q4v:C
20 8ipp:A 16 16 0.5000 0.5000 0.5000 -8
21 3n78:C 16 15 0.8125 0.8125 0.8667 -10 3n7b:C
22 3n78:D 16 15 0.8125 0.8125 0.8667 -10 3n7b:D
23 8k8s:F 15 15 0.6250 0.6667 0.6667 -10 8k8u:F
24 3gq3:B 14 14 0.6250 0.7143 0.7143 -11
25 3oju:C 14 14 0.6250 0.7143 0.7143 -11
26 7vp5:C 14 14 0.6250 0.7143 0.7143 -11 7vp5:G, 7vp5:K
27 1qp0:M 17 16 0.6250 0.5882 0.6250 -13 1qp7:M
28 1tk8:P 17 16 0.6250 0.5882 0.6250 -13
29 1zrc:W 17 16 0.6250 0.5882 0.6250 -13 1zrc:Y
30 1zrd:W 17 16 0.6250 0.5882 0.6250 -13 1zrd:Y
31 1zre:W 17 16 0.6250 0.5882 0.6250 -13 1zre:Y
32 2ql2:E 16 16 0.4375 0.4375 0.4375 -13 2ql2:G
33 3ere:A 16 16 0.4375 0.4375 0.4375 -13 3laj:G, 3laj:I, 3laj:K, 3lap:G, 3lap:I, 3lap:K
34 3g6q:D 16 16 0.4375 0.4375 0.4375 -13 3g6u:C
35 3gil:J 16 16 0.4375 0.4375 0.4375 -13
36 3gpy:B 16 16 0.4375 0.4375 0.4375 -13
37 3w6v:B 16 16 0.4375 0.4375 0.4375 -13
38 4fjl:T 16 16 0.4375 0.4375 0.4375 -13 4fjn:T
39 5iud:E 16 16 0.4375 0.4375 0.4375 -13
40 5vu9:T 16 16 0.4375 0.4375 0.4375 -13
41 5ytf:C 16 16 0.4375 0.4375 0.4375 -13 5ytg:C, 5yth:C, 5z3n:C
42 5zdz:I 16 16 0.4375 0.4375 0.4375 -13 5ze0:I, 5ze1:I
43 6fbc:C 16 16 0.4375 0.4375 0.4375 -13 6fbi:C
44 6fbe:C 16 16 0.4375 0.4375 0.4375 -13
45 6fqp:L 16 16 0.4375 0.4375 0.4375 -13 6fqp:M, 6fqq:L, 6fqq:M, 6fqq:G, 6fqq:H
46 6me0:B 16 16 0.4375 0.4375 0.4375 -13
47 6ryl:G 16 16 0.4375 0.4375 0.4375 -13 6ryl:I
48 7nx5:D 16 16 0.4375 0.4375 0.4375 -13
49 7oa5:K 16 16 0.4375 0.4375 0.4375 -13
50 7owf:C 16 16 0.4375 0.4375 0.4375 -13
51 8ej6:C 16 16 0.4375 0.4375 0.4375 -13
52 8em9:C 16 16 0.4375 0.4375 0.4375 -13
53 1pdn:A 15 15 0.5625 0.6000 0.6000 -15
54 1pdn:B 15 15 0.5625 0.6000 0.6000 -15
55 3sv4:C 15 15 0.5625 0.6000 0.6000 -15
56 4a3g:T 15 15 0.5000 0.5333 0.5333 -15
57 4n56:C 15 15 0.5625 0.6000 0.6000 -15
58 4rkh:A 15 15 0.5625 0.6000 0.6000 -15
59 5dqu:H 15 15 0.5625 0.6000 0.6000 -15 5dqu:I
60 6fbh:C 16 15 0.7500 0.7500 0.8000 -15
61 6p5a:D 15 15 0.5625 0.6000 0.6000 -15 6p5a:J
62 7rsr:T 15 15 0.5625 0.6000 0.6000 -15 7rss:T, 7tqw:T
63 1qtm:C 14 14 0.5625 0.6429 0.6429 -16
64 2f5o:B 14 14 0.5625 0.6429 0.6429 -16 3gp1:B
65 3jca:J 19 16 0.6875 0.5789 0.6875 -16 3jca:L
66 3knt:I 14 14 0.5625 0.6429 0.6429 -16
67 3vd2:E 14 14 0.5625 0.6429 0.6429 -16 3vd2:F, 3vd2:G, 3vd2:H
68 4bwj:C 14 14 0.5625 0.6429 0.6429 -16 4dlg:C, 3ktq:C, 4n5s:C, 3py8:C
69 4g4o:B 14 14 0.5625 0.6429 0.6429 -16 4g4q:B, 4g4r:B
70 4lmg:H 13 13 0.5625 0.6923 0.6923 -17
71 5szx:D 18 16 0.6250 0.5556 0.6250 -17
72 1dct:G 16 16 0.3750 0.3750 0.3750 -18
73 1g2d:A 16 16 0.3750 0.3750 0.3750 -18 1g2d:D, 1g2f:A, 1g2f:D
74 1gtw:D 16 16 0.3750 0.3750 0.3750 -18
75 1oh6:F 16 16 0.3750 0.3750 0.3750 -18 2wtu:F
76 1yfh:D 16 16 0.3750 0.3750 0.3750 -18 1yfh:F
77 2d45:E 16 16 0.3750 0.3750 0.3750 -18 2d45:F, 1xsd:B
78 2e42:C 16 16 0.3750 0.3750 0.3750 -18 2e43:C, 1gu4:C
79 3g6t:C 16 16 0.3750 0.3750 0.3750 -18
80 3g6t:D 16 16 0.3750 0.3750 0.3750 -18
81 3g8u:C 16 16 0.3750 0.3750 0.3750 -18 3g8x:C, 3g97:D
82 3jtg:B 16 16 0.3750 0.3750 0.3750 -18
83 3spz:T 16 16 0.3750 0.3750 0.3750 -18
84 4cn2:A 17 16 0.5625 0.5294 0.5625 -18
85 4fjk:T 16 16 0.3750 0.3750 0.3750 -18
86 4g7h:G 16 16 0.3750 0.3750 0.3750 -18 4g7h:Q, 4g7o:G, 4g7o:Q, 6l74:G, 4oin:G, 4oio:G, 4oip:G, 4oiq:G, 4oir:G
87 4g7z:G 16 16 0.3125 0.3125 0.3125 -18 4g7z:Q
88 4gjp:H 16 16 0.3750 0.3750 0.3750 -18 6lew:J, 6lew:D
89 4k8x:T 16 16 0.3750 0.3750 0.3750 -18
90 4lvk:C 16 16 0.3750 0.3750 0.3750 -18 4lvm:E
91 4osh:J 16 16 0.3750 0.3750 0.3750 -18 4osj:J
92 4osk:G 16 16 0.3750 0.3750 0.3750 -18
93 5cdr:F 16 16 0.3750 0.3750 0.3750 -18 5npk:F
94 5db9:T 16 16 0.3750 0.3750 0.3750 -18 5dbc:T
95 5dwb:C 13 13 0.6875 0.8462 0.8462 -18 5dwb:D, 3v21:I, 3v21:J, 3v21:K, 3v21:O, 3v21:V, 3v21:Y
96 5e69:C 16 16 0.3750 0.3750 0.3750 -18
97 5mf0:E 16 16 0.3750 0.3750 0.3750 -18
98 5va0:C 16 16 0.3750 0.3750 0.3750 -18
99 5zdz:J 16 16 0.3750 0.3750 0.3750 -18 5ze0:J, 5ze1:J
100 5zmc:C 16 16 0.3750 0.3750 0.3750 -18
101 6bch:B 16 16 0.3750 0.3750 0.3750 -18 6bch:E, 6bch:I, 6bch:N, 3r7p:B
102 6cg0:I 16 16 0.3750 0.3750 0.3750 -18 6cij:I, 6dbi:I, 6dbi:J, 6dbj:I, 6dbj:J, 3jbw:I, 3jbw:J, 3jby:I, 3jby:J
103 6fbf:C 16 16 0.3750 0.3750 0.3750 -18
104 6fbg:C 16 16 0.3750 0.3750 0.3750 -18
105 6khy:F 16 16 0.3750 0.3750 0.3750 -18
106 6khy:H 16 16 0.3750 0.3750 0.3750 -18
107 6khy:I 16 16 0.3750 0.3750 0.3750 -18
108 6pqy:C 16 16 0.3750 0.3750 0.3750 -18 6pqy:F
109 6qx2:f 17 16 0.5625 0.5294 0.5625 -18
110 7dn3:X 16 16 0.3750 0.3750 0.3750 -18
111 7l4v:D 16 16 0.3750 0.3750 0.3750 -18
112 7mz2:T 16 16 0.3750 0.3750 0.3750 -18 7mz8:T, 4ph5:T, 5v1h:T, 5v1n:T, 5v1o:T, 5vez:T, 8vff:T, 8vfi:T
113 7n5u:Y 16 16 0.3750 0.3750 0.3750 -18 7n5v:Y, 7n5v:I, 7n5v:E
114 7s9j:T 16 16 0.3750 0.3750 0.3750 -18 7s9k:T, 7s9l:T, 7s9m:T, 8vfj:T
115 7upz:D 16 16 0.3750 0.3750 0.3750 -18
116 7yzg:B 16 16 0.3750 0.3750 0.3750 -18
117 7zvt:D 16 16 0.3750 0.3750 0.3750 -18
118 8bzm:F 17 16 0.5625 0.5294 0.5625 -18
119 8dh1:A 16 16 0.3750 0.3750 0.3750 -18 8dh3:A, 8dh3:J, 8dh5:A, 8dh5:J
120 8ebh:C 16 16 0.3750 0.3750 0.3750 -18 8ek3:C, 8smj:C
121 8ee9:C 16 16 0.3750 0.3750 0.3750 -18
122 8p5q:C 17 16 0.5625 0.5294 0.5625 -18
123 1lrr:C 12 12 0.6875 0.9167 0.9167 -19 1lrr:F
124 1p59:B 11 11 0.5000 0.7273 0.7273 -19
125 3v21:L 12 12 0.6875 0.9167 0.9167 -19 3v21:M, 3v21:N, 3v21:P, 3v21:R, 3v21:Z
126 4dk9:B 11 11 0.5625 0.8182 0.8182 -19 8dvp:B, 8dvy:B, 8dw0:B, 8dw4:B, 8dw7:B, 8dw7:E, 8dwd:B, 8dwe:B, 8dwe:E, 8dwf:B, 8dwf:E, 8fay:B, 8fay:E, 1orn:B, 6q0c:B, 1rrq:B, 1rrs:B, 6u7t:B, 1vrl:B, 4yoq:B, 4yph:B, 4ypr:D, 4ypr:F
127 5deu:B 12 12 0.6875 0.9167 0.9167 -19
128 1b8i:D 15 15 0.5000 0.5333 0.5333 -20 4cyc:D, 4uus:D, 4uus:H
129 1cf7:C 15 15 0.5000 0.5333 0.5333 -20
130 1lli:D 20 16 0.6875 0.5500 0.6875 -20 1lmb:1
131 2ivk:F 15 15 0.5000 0.5333 0.5333 -20 2ivk:H
132 2rdj:F 15 15 0.5000 0.5333 0.5333 -20
133 2wb2:C 15 15 0.5000 0.5333 0.5333 -20
134 2wq6:C 15 15 0.5000 0.5333 0.5333 -20 2wq7:C
135 3foe:G 15 15 0.5000 0.5333 0.5333 -20 3fof:G
136 3iag:A 15 15 0.5000 0.5333 0.5333 -20
137 3knt:F 15 15 0.5000 0.5333 0.5333 -20 3knt:L
138 3qz7:T 15 15 0.5000 0.5333 0.5333 -20
139 3rb0:J 15 15 0.5000 0.5333 0.5333 -20
140 3rr7:C 15 15 0.5000 0.5333 0.5333 -20
141 3vok:U 15 15 0.5000 0.5333 0.5333 -20
142 4f4w:T 15 15 0.5000 0.5333 0.5333 -20 4f4w:F
143 4g4n:B 15 15 0.5000 0.5333 0.5333 -20 3jr5:B
144 4k97:D 15 15 0.5000 0.5333 0.5333 -20 4k98:D, 4k99:D, 4k9a:D, 4k9b:D, 4o6a:D, 5xzb:E, 5xze:E, 5xzg:E
145 4qwb:C 15 15 0.5000 0.5333 0.5333 -20 4qwc:C, 4qwc:F
146 5gke:D 15 15 0.5000 0.5333 0.5333 -20 5gkg:D
147 5gkf:D 15 15 0.5000 0.5333 0.5333 -20
148 5iud:B 15 15 0.5000 0.5333 0.5333 -20 5iud:K, 8vq2:C
149 5omv:T 15 15 0.5000 0.5333 0.5333 -20
150 5z00:A 15 15 0.5000 0.5333 0.5333 -20 5z00:E, 5z00:I
151 5z00:B 15 15 0.5000 0.5333 0.5333 -20 5z00:J
152 6e33:B 20 16 0.6875 0.5500 0.6875 -20
153 6f5f:F 15 15 0.5000 0.5333 0.5333 -20 6f5f:G, 6f5f:H
154 6ido:C 15 15 0.5000 0.5333 0.5333 -20 6ido:E
155 6j9c:C 15 15 0.5000 0.5333 0.5333 -20 6j9c:F
156 6p1h:T 15 15 0.5000 0.5333 0.5333 -20
157 6upx:N 15 15 0.5000 0.5333 0.5333 -20 6upy:N, 6upz:N, 6uq2:N
158 7f4y:P 15 15 0.5000 0.5333 0.5333 -20 7f4y:Q
159 8bd4:U 16 15 0.6875 0.6875 0.7333 -20
160 1qss:C 14 14 0.5000 0.5714 0.5714 -21 3rr8:C
161 1qsy:C 14 14 0.5000 0.5714 0.5714 -21
162 1r9s:T 14 14 0.5000 0.5714 0.5714 -21 1sfo:T
163 2hmi:E 19 16 0.6250 0.5263 0.6250 -21 1j5o:T
164 2noh:C 14 14 0.5000 0.5714 0.5714 -21 2xhi:C
165 3lwl:C 14 14 0.5000 0.5714 0.5714 -21
166 3po2:N 14 14 0.5000 0.5714 0.5714 -21
167 3rrh:C 14 14 0.5000 0.5714 0.5714 -21
168 4bxx:T 14 14 0.4375 0.5000 0.5000 -21
169 4c8k:C 14 14 0.5000 0.5714 0.5714 -21
170 4xiu:C 14 14 0.5000 0.5714 0.5714 -21
171 5g32:D 14 14 0.5000 0.5714 0.5714 -21 5g32:F, 5g33:D, 5g33:F, 5g34:D, 5g34:F, 5g35:D, 5g35:F, 5lcl:D, 5lcm:D
172 5m5y:S 19 16 0.6250 0.5263 0.6250 -21 5m64:S
173 5omf:T 14 14 0.5000 0.5714 0.5714 -21 5omq:T
174 5zoe:D 14 14 0.5000 0.5714 0.5714 -21 5zof:D
175 6eko:F 14 14 0.5000 0.5714 0.5714 -21 6eko:E
176 6rqt:U 14 14 0.5000 0.5714 0.5714 -21
177 7vp4:C 14 14 0.5000 0.5714 0.5714 -21 7vp4:G, 7vp4:K
178 7z9c:E 14 14 0.5000 0.5714 0.5714 -21 7z9g:E, 7z9k:E, 7z9m:E
179 8e5d:B 14 14 0.5000 0.5714 0.5714 -21 8e5e:B
180 8ef9:E 14 14 0.5000 0.5714 0.5714 -21
181 8th9:D 14 14 0.5000 0.5714 0.5714 -21
182 1c7y:B 13 13 0.5000 0.6154 0.6154 -22
183 1h0m:E 18 16 0.5625 0.5000 0.5625 -22 1h0m:F, 1h0m:G, 1h0m:H
184 2f5p:C 13 13 0.5000 0.6154 0.6154 -22
185 3hox:T 18 16 0.5000 0.4444 0.5000 -22
186 3mfh:T 13 13 0.5000 0.6154 0.6154 -22
187 3mfi:T 13 13 0.5000 0.6154 0.6154 -22
188 3oha:T 13 13 0.5000 0.6154 0.6154 -22 3ohb:T
189 3vd2:L 13 13 0.5000 0.6154 0.6154 -22
190 4qtj:C 13 13 0.5000 0.6154 0.6154 -22
191 6lb3:I 18 16 0.5625 0.5000 0.5625 -22 6lb3:K
192 6ldm:B 18 16 0.5625 0.5000 0.5625 -22
193 6od3:X 13 13 0.5000 0.6154 0.6154 -22 6od3:Y, 6od3:Z
194 7kuf:C 18 16 0.5625 0.5000 0.5625 -22
195 7l4x:E 13 13 0.5000 0.6154 0.6154 -22 7l4y:F, 7l4y:E
196 8eae:E 18 16 0.5625 0.5000 0.5625 -22 8eae:F, 8eae:I, 8eae:J, 8ecc:E, 8ecc:F, 8ecc:I, 8ecc:J, 8g10:E, 8g10:F, 8g10:I, 8g10:J, 8g1j:E, 8g1j:F, 8g1j:I, 8g1j:J, 8g23:E, 8g23:F, 8g23:I, 8g23:J, 8g2p:E, 8g2p:F, 8g2p:I, 8g2p:J, 8g2q:E, 8g2q:F, 8g2q:I, 8g2q:J, 8gim:E, 8gim:F, 8gim:I, 8gim:J, 8gin:E, 8gin:F, 8gin:I, 8gin:J, 8gio:E, 8gio:F, 8gio:I, 8gio:J, 8gip:E, 8gip:F, 8gip:I, 8gip:J, 8gir:E, 8gir:F, 8gir:I, 8gir:J, 8gis:E, 8gis:F, 8gis:I, 8gis:J, 8git:E, 8git:F, 8git:I, 8git:J, 4ley:E, 4ley:F, 4ley:G, 4ley:H, 4ley:I, 4ley:J, 4ley:K, 4ley:L, 4lez:E, 4lez:F, 4lez:I, 4lez:J, 8sj0:E, 8sj0:F, 8sj0:I, 8sj0:J, 8sj1:E, 8sj1:F, 8sj1:I, 8sj1:J, 8sj2:E, 8sj2:F, 8sj2:I, 8sj2:J, 8skt:E, 8skt:F, 8skt:I, 8skt:J, 7utt:E, 7utt:F, 7utt:I, 7utt:J, 7uux:E, 7uux:F, 7uux:I, 7uux:J, 7uxw:E, 7uxw:F, 7uxw:I, 7uxw:J, 7uyq:E, 7uyq:F, 7uyq:I, 7uyq:J, 7uyz:E, 7uyz:F, 7uyz:I, 7uyz:J, 7uzr:E, 7uzr:F, 7uzr:I, 7uzr:J, 7v0c:E, 7v0c:F, 7v0c:I, 7v0c:J, 7v0r:E, 7v0r:F, 7v0r:I, 7v0r:J, 7v0w:E, 7v0w:F, 7v0w:I, 7v0w:J
197 8j9w:E 13 13 0.5000 0.6154 0.6154 -22 8j9w:C
198 8sva:B 18 16 0.5625 0.5000 0.5625 -22
199 1a0a:D 17 16 0.5000 0.4706 0.5000 -23
200 1bdh:B 17 16 0.5000 0.4706 0.5000 -23 1bdi:B, 1jfs:B, 1jft:B, 2pua:B, 2pub:B, 2puc:B, 2pud:B, 2pue:B, 2puf:B, 2pug:B, 1qpz:M, 1vpw:B
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987 8h9h:A 13 13 0.3750 0.4615 0.4615 -32
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992 8spq:C 13 13 0.3750 0.4615 0.4615 -32
993 8srs:C 13 13 0.3750 0.4615 0.4615 -32 8t76:C
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996 8xmc:N 19 16 0.6250 0.5263 0.6250 -32
997 8yzt:E 13 13 0.3750 0.4615 0.4615 -32 8yzt:F
998 9baq:H 18 16 0.4375 0.3889 0.4375 -32
999 9f6i:P 14 13 0.5625 0.6429 0.6923 -32 9f6j:P, 9f6k:P, 9f6l:P
1000 1ais:E 17 16 0.3750 0.3529 0.3750 -33

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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