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BioLiP
>dna
aagggcgcctataaaagggggtggttgtgaacttcatctacttcgagccgagcagacgtgcct

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wak:X 63 63 1.0000 1.0000 1.0000 3.29e-29
2 8wal:X 63 63 0.9841 0.9841 0.9841 5.51e-27
3 8wan:X 63 63 0.9683 0.9683 0.9683 2.56e-25
4 8wao:X 63 63 0.9524 0.9524 0.9524 4.29e-23
5 8was:Y 73 66 0.9683 0.8356 0.9242 2.00e-21
6 8wap:X 63 63 0.9365 0.9365 0.9365 2.00e-21
7 8war:Y 73 67 0.9683 0.8356 0.9104 2.58e-20
8 8waq:X 63 63 0.9206 0.9206 0.9206 3.34e-19
9 8waq:Y 73 68 0.9683 0.8356 0.8971 1.20e-18
10 8war:X 63 63 0.9048 0.9048 0.9048 1.55e-17
11 8wap:Y 73 69 0.9683 0.8356 0.8841 1.55e-17
12 8wao:Y 73 70 0.9841 0.8493 0.8857 1.55e-17
13 8wan:Y 73 71 0.9841 0.8493 0.8732 2.01e-16
14 8was:X 63 63 0.8889 0.8889 0.8889 2.60e-15
15 8wak:Y 77 35 0.5556 0.4545 1.0000 1.21e-13
16 8wak:Y 77 30 0.4762 0.3896 1.0000 7.28e-11
17 8wal:Y 78 33 0.5238 0.4231 1.0000 1.56e-12
18 8wal:Y 78 30 0.4762 0.3846 1.0000 7.28e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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