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BioLiP
>dna
aaacatcaagggtccc

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
Alignment
score
Homologs
to hit
1 7n5v:X 16 16 1.0000 1.0000 1.0000 32 7n5v:H, 7n5v:D
2 2rdj:D 16 16 0.6250 0.6250 0.6250 2
3 7n5u:X 16 15 0.9375 0.9375 1.0000 0
4 1by4:G 16 16 0.5625 0.5625 0.5625 -3 4cn7:C, 4cn7:G
5 3g8u:C 16 16 0.5625 0.5625 0.5625 -3 3g8x:C, 3g97:D
6 5krb:A 16 16 0.5625 0.5625 0.5625 -3
7 6fbh:C 16 16 0.5625 0.5625 0.5625 -3
8 7n5w:X 16 15 0.8750 0.8750 0.9333 -5
9 1tkd:P 16 16 0.5000 0.5000 0.5000 -8
10 4o3m:T 16 16 0.5000 0.5000 0.5000 -8
11 4r8u:D 16 16 0.5000 0.5000 0.5000 -8 5yur:B, 5yut:H, 5yuv:H, 5yyd:C
12 4u7d:Q 16 16 0.5000 0.5000 0.5000 -8
13 5zmc:D 16 16 0.5000 0.5000 0.5000 -8
14 6xwh:A 16 16 0.5000 0.5000 0.5000 -8
15 7v9f:C 16 16 0.5000 0.5000 0.5000 -8 7v9g:C, 7v9g:F, 7v9g:I, 7v9g:L
16 7vov:C 16 16 0.5000 0.5000 0.5000 -8 7vox:E, 7vox:G
17 1pdn:A 15 15 0.6250 0.6667 0.6667 -10
18 2rdj:F 15 15 0.6250 0.6667 0.6667 -10
19 7f2f:E 14 14 0.6250 0.7143 0.7143 -11
20 1hjc:B 16 16 0.4375 0.4375 0.4375 -13 1hjc:E
21 1s0m:D 16 16 0.4375 0.4375 0.4375 -13 1s0m:F
22 1vol:C 16 16 0.4375 0.4375 0.4375 -13
23 3bs1:C 16 16 0.4375 0.4375 0.4375 -13
24 3co6:B 16 16 0.4375 0.4375 0.4375 -13
25 3fyl:C 16 16 0.4375 0.4375 0.4375 -13 3g9m:C, 3g9o:D, 3g9p:D
26 3g6t:C 16 16 0.4375 0.4375 0.4375 -13
27 3g99:D 16 16 0.4375 0.4375 0.4375 -13 3g9i:D
28 3n78:C 16 16 0.4375 0.4375 0.4375 -13 3n7b:C
29 4cn2:A 17 16 0.6250 0.5882 0.6250 -13
30 4dfp:C 16 16 0.4375 0.4375 0.4375 -13 5nkl:C, 3syz:C, 5ytc:C, 5ytd:C
31 4ejy:C 16 16 0.4375 0.4375 0.4375 -13 4ejy:E, 4ejz:C, 4ejz:E, 3twm:C, 3twm:E
32 4f4y:C 16 16 0.4375 0.4375 0.4375 -13 4f4y:P
33 4ol8:H 16 16 0.4375 0.4375 0.4375 -13
34 4oss:H 16 16 0.4375 0.4375 0.4375 -13
35 4q5s:H 16 16 0.4375 0.4375 0.4375 -13
36 4xyq:C 16 16 0.4375 0.4375 0.4375 -13
37 5co8:X 16 16 0.4375 0.4375 0.4375 -13
38 5m0r:U 16 16 0.4375 0.4375 0.4375 -13 5m0r:V
39 5uan:E 17 16 0.6250 0.5882 0.6250 -13
40 5ytf:C 16 16 0.4375 0.4375 0.4375 -13 5ytg:C, 5yth:C, 5z3n:C
41 6fbc:C 16 16 0.4375 0.4375 0.4375 -13 6fbi:C
42 6fbg:C 16 16 0.4375 0.4375 0.4375 -13
43 6isg:D 16 16 0.4375 0.4375 0.4375 -13
44 6ish:D 16 16 0.4375 0.4375 0.4375 -13
45 6jup:C 16 16 0.4375 0.4375 0.4375 -13
46 7eof:C 16 16 0.4375 0.4375 0.4375 -13
47 7k0y:G 16 16 0.4375 0.4375 0.4375 -13 7k19:G, 7k1b:G, 7k1k:G, 7k1n:G, 7su3:G
48 7oyk:EEE 16 16 0.4375 0.4375 0.4375 -13 7oyk:LLL, 7oyk:GGG
49 7yq8:D 16 16 0.4375 0.4375 0.4375 -13
50 7zvt:D 16 16 0.4375 0.4375 0.4375 -13
51 8cyf:C 16 16 0.4375 0.4375 0.4375 -13
52 1by4:E 15 15 0.5625 0.6000 0.6000 -15
53 1dsz:C 15 15 0.5625 0.6000 0.6000 -15
54 4gle:B 15 15 0.5625 0.6000 0.6000 -15
55 4h10:C 15 15 0.5625 0.6000 0.6000 -15
56 1e7j:B 14 14 0.5625 0.6429 0.6429 -16 8r1x:B
57 4kb0:C 18 16 0.6250 0.5556 0.6250 -17 4kb0:D
58 4nqa:F 18 16 0.6250 0.5556 0.6250 -17 4nqa:M
59 5k5h:B 13 13 0.5625 0.6923 0.6923 -17
60 1dp7:D 16 16 0.3750 0.3750 0.3750 -18
61 1oh6:E 16 16 0.3750 0.3750 0.3750 -18 2wtu:E
62 1pue:A 16 16 0.3750 0.3750 0.3750 -18 1pue:C
63 1w0u:C 16 16 0.3750 0.3750 0.3750 -18
64 2e42:D 16 16 0.3750 0.3750 0.3750 -18 2e43:D, 1gu4:D
65 2gat:C 16 16 0.3750 0.3750 0.3750 -18 3gat:C
66 2gzk:C 16 16 0.3750 0.3750 0.3750 -18
67 2ihn:C 17 16 0.5625 0.5294 0.5625 -18
68 2ql2:E 16 16 0.3750 0.3750 0.3750 -18 2ql2:G
69 2qnf:C 16 16 0.3750 0.3750 0.3750 -18
70 2qnf:F 16 16 0.3750 0.3750 0.3750 -18
71 2v9w:F 16 16 0.3750 0.3750 0.3750 -18 2va2:D
72 2z33:C 16 16 0.3750 0.3750 0.3750 -18
73 3coa:B 16 16 0.3750 0.3750 0.3750 -18 3coa:E
74 3ere:A 16 16 0.3750 0.3750 0.3750 -18 3laj:G, 3laj:I, 3laj:K, 3lap:G, 3lap:I, 3lap:K
75 3f27:B 16 16 0.3750 0.3750 0.3750 -18 6l6y:B, 6l6y:E, 3u2b:B
76 3fyl:D 16 16 0.3750 0.3750 0.3750 -18 3g9m:D, 3g9o:C, 3g9p:C
77 3g6q:C 16 16 0.3750 0.3750 0.3750 -18 3g6u:D
78 3g6q:D 16 16 0.3750 0.3750 0.3750 -18 3g6u:C
79 3g8u:D 16 16 0.3750 0.3750 0.3750 -18 3g8x:D, 3g97:C
80 3g99:C 16 16 0.3750 0.3750 0.3750 -18 3g9i:C
81 3gpy:B 16 16 0.3750 0.3750 0.3750 -18
82 3igc:D 16 16 0.3750 0.3750 0.3750 -18
83 3jtg:C 16 16 0.3750 0.3750 0.3750 -18
84 3khh:E 16 16 0.3750 0.3750 0.3750 -18
85 3mq6:P 16 16 0.3750 0.3750 0.3750 -18
86 3n78:D 16 16 0.3750 0.3750 0.3750 -18 3n7b:D
87 3osp:T 16 16 0.3750 0.3750 0.3750 -18
88 3qsv:E 16 16 0.3750 0.3750 0.3750 -18 3qsv:F, 3qsv:G, 3qsv:H
89 3veb:M 16 16 0.3750 0.3750 0.3750 -18
90 3w6v:C 16 16 0.3750 0.3750 0.3750 -18
91 4a0a:D 16 16 0.3750 0.3750 0.3750 -18
92 4cn3:E 17 16 0.5625 0.5294 0.5625 -18 4cn3:G
93 4df8:C 16 16 0.3750 0.3750 0.3750 -18 5szt:C, 5yte:C
94 4dfj:C 16 16 0.3750 0.3750 0.3750 -18 4dfk:C, 5e41:C, 4elt:C, 3m8r:C, 3m8s:C, 3ojs:C
95 4dfm:C 16 16 0.3750 0.3750 0.3750 -18 4elu:C, 5o7t:C, 5oxj:C, 3rtv:C
96 4dle:C 16 16 0.3750 0.3750 0.3750 -18
97 4fjl:T 16 16 0.3750 0.3750 0.3750 -18 4fjn:T
98 4gjp:H 16 16 0.3750 0.3750 0.3750 -18 6lew:J, 6lew:D
99 4i9q:D 17 16 0.5625 0.5294 0.5625 -18
100 4k8x:T 16 16 0.3750 0.3750 0.3750 -18
101 4lvl:C 16 16 0.3750 0.3750 0.3750 -18
102 4osh:J 16 16 0.3750 0.3750 0.3750 -18 4osj:J
103 4osj:H 16 16 0.3750 0.3750 0.3750 -18 4osr:H, 4ost:H, 4ot0:H, 4ot3:H
104 4osl:H 17 16 0.5625 0.5294 0.5625 -18 4oss:J
105 4u7d:P 17 16 0.5625 0.5294 0.5625 -18
106 5cc0:D 16 16 0.3750 0.3750 0.3750 -18 4hn5:D, 4hn6:D
107 5cnq:R 16 16 0.3750 0.3750 0.3750 -18 6grb:R, 6grc:R, 6grd:R
108 5va7:D 16 16 0.3750 0.3750 0.3750 -18
109 5vu9:T 16 16 0.3750 0.3750 0.3750 -18
110 5wmb:T 16 16 0.3750 0.3750 0.3750 -18
111 6bqu:D 16 16 0.3750 0.3750 0.3750 -18 6bsf:D
112 6ct9:C 16 16 0.3750 0.3750 0.3750 -18 6cta:C, 7ftn:B
113 6dww:B 16 16 0.3750 0.3750 0.3750 -18 6dwy:B, 6dx0:B
114 6fbd:C 16 16 0.3750 0.3750 0.3750 -18
115 6fbe:C 16 16 0.3750 0.3750 0.3750 -18
116 6fbf:C 16 16 0.3750 0.3750 0.3750 -18
117 6khy:F 16 16 0.3750 0.3750 0.3750 -18
118 6khy:G 16 16 0.3750 0.3750 0.3750 -18
119 6lew:C 16 16 0.3750 0.3750 0.3750 -18
120 6p71:H 16 16 0.3750 0.3750 0.3750 -18
121 6ryl:F 16 16 0.3750 0.3750 0.3750 -18 6ryl:H
122 6usp:E 16 16 0.3750 0.3750 0.3750 -18
123 6vg6:T 16 16 0.3750 0.3750 0.3750 -18 6vg6:C, 6vgm:C, 6vgm:T
124 7aeo:C 16 16 0.3750 0.3750 0.3750 -18
125 7eyi:B 16 16 0.3750 0.3750 0.3750 -18
126 7v9f:B 16 16 0.3750 0.3750 0.3750 -18 7v9g:B, 7v9g:E, 7v9g:H, 7v9g:K
127 7xhv:C 16 16 0.3750 0.3750 0.3750 -18 7xi3:C
128 7y3k:G 16 16 0.3750 0.3750 0.3750 -18 7y3m:G, 7y3m:D, 7y3m:K
129 7y3k:H 16 16 0.3750 0.3750 0.3750 -18 7y3m:H, 7y3m:E, 7y3m:L
130 7yzg:C 16 16 0.3750 0.3750 0.3750 -18
131 7zus:DDD 16 16 0.3750 0.3750 0.3750 -18 7zus:FFF, 7zus:HHH, 7zx0:GGG, 7zx0:III, 7zx0:KKK, 7zx0:MMM, 7zx0:OOO, 7zx0:QQQ, 7zx1:GGG, 7zx1:III, 7zx1:KKK, 7zx1:MMM, 7zx1:OOO, 7zx1:QQQ
132 8cyf:D 16 16 0.3750 0.3750 0.3750 -18
133 8d2o:D 12 12 0.5625 0.7500 0.7500 -18 8d2q:D
134 8dh1:A 16 16 0.3750 0.3750 0.3750 -18 8dh3:A, 8dh3:J, 8dh5:A, 8dh5:J
135 8e3k:C 16 16 0.3750 0.3750 0.3750 -18 8e5y:C, 8emd:C, 8eng:C, 8eo1:C, 8eo4:C, 8smh:C, 8sp1:C, 8t9u:C
136 8ekv:C 16 16 0.3750 0.3750 0.3750 -18
137 8ekz:C 16 16 0.3750 0.3750 0.3750 -18
138 8eqk:C 16 16 0.3750 0.3750 0.3750 -18 8eql:C
139 8k3d:C 16 16 0.3750 0.3750 0.3750 -18
140 9cex:A 16 16 0.3750 0.3750 0.3750 -18 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
141 1k7a:C 15 15 0.5000 0.5333 0.5333 -20
142 2lef:C 15 15 0.5000 0.5333 0.5333 -20
143 2lev:C 15 15 0.5000 0.5333 0.5333 -20
144 2nbj:B 15 15 0.5000 0.5333 0.5333 -20
145 2nqj:D 15 15 0.5000 0.5333 0.5333 -20
146 4h10:D 15 15 0.5000 0.5333 0.5333 -20
147 4kaz:B 15 15 0.5000 0.5333 0.5333 -20
148 4rkh:B 15 15 0.5000 0.5333 0.5333 -20
149 7o0h:E 15 15 0.5000 0.5333 0.5333 -20
150 7zyg:D 15 15 0.5000 0.5333 0.5333 -20
151 8dh0:E 15 15 0.5000 0.5333 0.5333 -20 8dh4:A, 8dh4:N
152 8ok9:S 15 15 0.5000 0.5333 0.5333 -20
153 1fjl:D 14 14 0.5000 0.5714 0.5714 -21
154 1glu:C 19 16 0.6250 0.5263 0.6250 -21 1glu:D, 1r4o:C, 1r4o:D
155 1k7a:F 14 14 0.5000 0.5714 0.5714 -21
156 1lfu:A 14 14 0.5000 0.5714 0.5714 -21
157 1lv5:D 14 14 0.5000 0.5714 0.5714 -21 1lv5:F
158 1qtm:C 14 14 0.5000 0.5714 0.5714 -21
159 2evf:C 14 14 0.5000 0.5714 0.5714 -21
160 2evg:C 14 14 0.5000 0.5714 0.5714 -21
161 2evi:C 14 14 0.5000 0.5714 0.5714 -21
162 2pyj:Y 14 14 0.5000 0.5714 0.5714 -21 2pyj:K, 2pzs:Y, 2pzs:S
163 3e0d:D 19 16 0.6250 0.5263 0.6250 -21 3e0d:F
164 3gnb:D 14 14 0.5000 0.5714 0.5714 -21
165 3knt:I 14 14 0.5000 0.5714 0.5714 -21
166 5cg8:B 14 14 0.5000 0.5714 0.5714 -21
167 5gnj:L 14 14 0.5000 0.5714 0.5714 -21 5gnj:D
168 6kc8:P 14 14 0.5000 0.5714 0.5714 -21
169 6xnx:I 14 14 0.5000 0.5714 0.5714 -21 6xnx:J, 6xny:I, 6xny:J
170 7n5s:X 14 14 0.5000 0.5714 0.5714 -21
171 7s0t:T 14 14 0.5000 0.5714 0.5714 -21
172 1s0n:T 18 16 0.5625 0.5000 0.5625 -22
173 1ynw:C 18 16 0.5625 0.5000 0.5625 -22
174 1yo5:B 13 13 0.5000 0.6154 0.6154 -22
175 4glx:C 13 13 0.5000 0.6154 0.6154 -22 2owo:C
176 4kb1:C 18 16 0.5625 0.5000 0.5625 -22 4kb1:D
177 5gnj:J 13 13 0.5000 0.6154 0.6154 -22
178 6kvo:E 18 16 0.5625 0.5000 0.5625 -22
179 7tib:J 18 16 0.5625 0.5000 0.5625 -22 7tid:J
180 7z5k:F 18 16 0.5625 0.5000 0.5625 -22
181 8ia3:H 18 16 0.5625 0.5000 0.5625 -22
182 9ggq:E 18 16 0.5625 0.5000 0.5625 -22
183 1cdw:B 16 16 0.3125 0.3125 0.3125 -23
184 1drg:B 16 16 0.3125 0.3125 0.3125 -23 1f44:M
185 1efa:E 17 16 0.5000 0.4706 0.5000 -23 2pe5:E, 2pe5:F
186 1g2d:B 16 16 0.3125 0.3125 0.3125 -23 1g2d:E, 1g2f:B, 1g2f:E
187 1g4d:B 16 16 0.3125 0.3125 0.3125 -23
188 1gtw:C 16 16 0.3125 0.3125 0.3125 -23
189 1gtw:D 16 16 0.3125 0.3125 0.3125 -23
190 1hjc:C 16 16 0.3125 0.3125 0.3125 -23 1hjc:F
191 1iaw:C 16 16 0.3125 0.3125 0.3125 -23
192 1j59:D 17 16 0.5000 0.4706 0.5000 -23 1j59:F
193 1le9:D 12 12 0.5000 0.6667 0.6667 -23 1le9:H
194 1lq1:F 16 16 0.3125 0.3125 0.3125 -23 1lq1:H
195 1n48:C 16 16 0.3125 0.3125 0.3125 -23 2va3:T
196 1njx:C 12 12 0.5000 0.6667 0.6667 -23
197 1oh6:F 16 16 0.3125 0.3125 0.3125 -23 2wtu:F
198 1run:D 17 16 0.5000 0.4706 0.5000 -23 1run:F, 1ruo:D, 1ruo:F
199 1tk0:T 16 16 0.3125 0.3125 0.3125 -23
200 1tk8:P 17 16 0.5000 0.4706 0.5000 -23
201 1trr:C 16 16 0.3125 0.3125 0.3125 -23 1trr:F, 1trr:I, 1trr:L
202 2aq4:T 16 16 0.3125 0.3125 0.3125 -23 3bjy:T, 3gqc:F, 3gqc:H, 3gqc:J, 3gqc:L, 3iay:T
203 2ayb:C 16 16 0.3125 0.3125 0.3125 -23 2ayb:D, 1jj4:C, 1jj4:D
204 2bnz:E 17 16 0.5000 0.4706 0.5000 -23
205 2c2r:T 16 16 0.3125 0.3125 0.3125 -23 2uvv:T, 2w8k:T, 2w8l:T, 2w9a:T, 2w9c:E, 2w9c:F
206 2c6y:C 16 16 0.3125 0.3125 0.3125 -23
207 2fvs:B 16 16 0.3125 0.3125 0.3125 -23
208 2ia6:F 16 16 0.3125 0.3125 0.3125 -23
209 2ivk:I 16 16 0.3125 0.3125 0.3125 -23 2ivk:J
210 2jef:T 16 16 0.3125 0.3125 0.3125 -23 2jei:T
211 2kmk:B 16 16 0.3125 0.3125 0.3125 -23
212 2oyq:E 16 16 0.3125 0.3125 0.3125 -23
213 2ql2:F 16 16 0.3125 0.3125 0.3125 -23 2ql2:H
214 2qnf:D 16 16 0.3125 0.3125 0.3125 -23
215 2qnf:E 16 16 0.3125 0.3125 0.3125 -23
216 2vla:M 12 12 0.5000 0.6667 0.6667 -23
217 3cvs:E 12 12 0.5000 0.6667 0.6667 -23 3cvs:G, 3cvt:E, 3cvt:G, 3cw7:E, 3cw7:G, 3cwa:E, 3cwa:G, 3cws:E, 3cws:G, 3cwt:E, 3cwt:G, 3d4v:E, 3d4v:G
218 3ere:B 16 16 0.3125 0.3125 0.3125 -23 3laj:H, 3laj:J, 3laj:L, 3lap:H, 3lap:J, 3lap:L
219 3f73:C 16 16 0.3125 0.3125 0.3125 -23
220 3g6t:D 16 16 0.3125 0.3125 0.3125 -23
221 3hm9:X 16 16 0.3125 0.3125 0.3125 -23 3hvr:C, 3hvr:M, 4kpy:C, 4kpy:E, 4n41:E, 4nca:C, 4nca:E, 4ncb:C
222 3l8b:C 16 16 0.3125 0.3125 0.3125 -23 3l8b:E
223 3mfk:C 16 16 0.3125 0.3125 0.3125 -23
224 3osg:B 12 12 0.5000 0.6667 0.6667 -23 3osg:E
225 3pw7:B 16 16 0.3125 0.3125 0.3125 -23 3pw7:F
226 3spz:T 16 16 0.3125 0.3125 0.3125 -23
227 4cgz:C 17 16 0.5000 0.4706 0.5000 -23
228 4fjk:T 16 16 0.3125 0.3125 0.3125 -23
229 4gc6:T 16 16 0.3125 0.3125 0.3125 -23 2j6s:T, 2w9b:E, 2w9b:F
230 4j1j:H 17 16 0.5000 0.4706 0.5000 -23 4j1j:I
231 4lvk:C 16 16 0.3125 0.3125 0.3125 -23 4lvm:E
232 4m3r:T 16 16 0.3125 0.3125 0.3125 -23
233 4m3y:T 16 16 0.3125 0.3125 0.3125 -23
234 4osi:H 17 16 0.5000 0.4706 0.5000 -23 4osm:H, 4osq:H, 4osq:J, 4osr:J, 4ost:J, 4osv:H, 4osv:J, 4osw:H, 4osz:H, 4ot0:J, 4ot3:J, 4oto:H, 4oto:J, 3v6t:H, 3v6t:J
235 4osr:G 16 16 0.3125 0.3125 0.3125 -23 4oss:G
236 4q0z:D 17 16 0.5000 0.4706 0.5000 -23 4q0z:H, 4q10:D
237 4qw8:D 16 16 0.3125 0.3125 0.3125 -23 4qw9:D, 4qwa:D, 4qwd:D, 4qwe:D
238 4v8s:BS 16 16 0.3125 0.3125 0.3125 -23
239 4xqq:F 16 16 0.3125 0.3125 0.3125 -23
240 4xr2:C 16 16 0.3125 0.3125 0.3125 -23
241 4xr3:C 16 16 0.3125 0.3125 0.3125 -23
242 5c4a:S 16 16 0.3125 0.3125 0.3125 -23
243 5c5j:C 17 16 0.5000 0.4706 0.5000 -23 6ig1:G, 6ig1:B, 4ir1:C, 4ir9:C, 4irc:C, 4ird:C, 4q43:C, 4q44:C, 4q45:C, 4r8u:V, 4r8u:C, 5yur:C, 5yus:C, 5yut:C, 5yuu:G, 5yuu:B, 5yuu:C, 5yuv:C, 5yuw:B, 5yuw:C, 5yuw:G, 5yux:G, 5yux:B, 5yuz:G, 5yuz:B, 5yv0:G, 5yv0:B, 5yv1:G, 5yv1:B, 5yv3:G, 5yv3:B, 5yv3:C, 5yyd:G, 5yyd:B, 5yye:G, 5yye:C, 5zlv:B
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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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