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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    2 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    3 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    4 9fbv:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    5 9fbv:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    6 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    7 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    8 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    9 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    10 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    11 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    12 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    13 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    14 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    15 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    16 9fbv:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    17 9fbv:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    18 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    19 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    20 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    21 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    22 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    23 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    24 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    25 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    26 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    27 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    28 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    29 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    30 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    31 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    32 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    33 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    34 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    35 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    36 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    37 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    38 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    39 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    40 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    41 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    42 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    43 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    44 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    45 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    46 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    47 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    48 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    49 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    50 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    51 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    52 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    53 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    54 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    55 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    56 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    57 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    58 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    59 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    60 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    61 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    62 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    63 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    64 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    65 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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