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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9bkd:B (2.6) BS01 rna N/A N/A P62280 39117603
    2 9bkd:C (2.6) BS01 rna N/A N/A P62701 39117603
    3 9bkd:D (2.6) BS01 rna N/A N/A P46781 39117603
    4 9bkd:E (2.6) BS01 rna N/A N/A P62266 39117603
    5 9bkd:F (2.6) BS01 rna N/A N/A P62861 39117603
    6 9bkd:G (2.6) BS01 rna N/A N/A P62081 39117603
    7 9bkd:H (2.6) BS01 rna N/A N/A P42677 39117603
    8 9bkd:I (2.6) BS01 rna N/A N/A P62277 39117603
    9 9bkd:J (2.6) BS01 rna N/A N/A P62244 39117603
    10 9bkd:L (2.6) BS01 rna N/A N/A P15880 39117603
    11 9bkd:M (2.6) BS01 rna N/A N/A P08708 39117603
    12 9bkd:N (2.6) BS01 rna N/A N/A P08865 39117603
    13 9bkd:O (2.6) BS01 rna N/A N/A P61247 39117603
    14 9bkd:P (2.6) BS01 rna N/A N/A P62263 39117603
    15 9bkd:Q (2.6) BS01 rna N/A N/A P62854 39117603
    16 9bkd:Q (2.6) BS02 ZN N/A N/A P62854 39117603
    17 9bkd:R (2.6) BS01 rna N/A N/A P62241 39117603
    18 9bkd:S (2.6) BS01 rna N/A N/A P62753 39117603
    19 9bkd:T (2.6) BS01 rna N/A N/A P62847 39117603
    20 9bkd:U (2.6) BS01 rna N/A N/A Q53EL6 39117603
    21 9bkd:V (2.6) BS01 rna N/A N/A P46782 39117603
    22 9bkd:Y (2.6) BS01 rna N/A N/A P62249 39117603
    23 9bkd:Z (2.6) BS01 rna N/A N/A P23396 39117603
    24 9bkd:a (2.6) BS01 rna N/A N/A P46783 39117603
    25 9bkd:b (2.6) BS01 rna N/A N/A P62841 39117603
    26 9bkd:c (2.6) BS01 rna N/A N/A P63244 39117603
    27 9bkd:d (2.6) BS01 rna N/A N/A P39019 39117603
    28 9bkd:e (2.6) BS01 rna N/A N/A P62851 39117603
    29 9bkd:f (2.6) BS01 rna N/A N/A P62269 39117603
    30 9bkd:f (2.6) BS02 MG N/A N/A P62269 39117603
    31 9bkd:h (2.6) BS01 rna N/A N/A P60866 39117603
    32 9bkd:i (2.6) BS01 rna N/A N/A P62273 39117603
    33 9bkd:i (2.6) BS02 ZN N/A N/A P62273 39117603
    34 9bkd:k (2.6) BS01 rna N/A N/A P62979 39117603
    35 9bkd:k (2.6) BS02 ZN N/A N/A P62979 39117603
    36 9bkd:m (2.6) BS01 rna N/A N/A P25398 39117603
    37 9bkd:n (2.6) BS01 rna N/A N/A P62857 39117603

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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