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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    2 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    3 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    4 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    5 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    6 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    7 9bct:B (2.5) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    8 9bct:B (2.5) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    9 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    10 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    11 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    12 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 N/A
    13 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    14 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    15 9bct:J (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    16 9bct:J (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    17 9bct:M (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    18 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    19 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    20 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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