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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9b00:10 (2.8) BS01 rna N/A N/A P60493 39019034
    2 9b00:10 (2.8) BS02 rna N/A N/A P60493 39019034
    3 9b00:10 (2.8) BS03 MG N/A N/A P60493 39019034
    4 9b00:10 (2.8) BS04 MG N/A N/A P60493 39019034
    5 9b00:11 (2.8) BS01 rna N/A N/A P60494 39019034
    6 9b00:11 (2.8) BS02 rna N/A N/A P60494 39019034
    7 9b00:11 (2.8) BS03 MG N/A N/A P60494 39019034
    8 9b00:11 (2.8) BS04 MG N/A N/A P60494 39019034
    9 9b00:12 (2.8) BS01 rna N/A N/A Q5SHP6 39019034
    10 9b00:13 (2.8) BS01 rna N/A N/A Q5SHQ6 39019034
    11 9b00:13 (2.8) BS02 rna N/A N/A Q5SHQ6 39019034
    12 9b00:13 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    13 9b00:13 (2.8) BS04 MG N/A N/A Q5SHQ6 39019034
    14 9b00:14 (2.8) BS01 rna N/A N/A Q5SJE1 39019034
    15 9b00:14 (2.8) BS02 ZN N/A N/A Q5SJE1 39019034
    16 9b00:15 (2.8) BS01 rna N/A N/A P80339 39019034
    17 9b00:15 (2.8) BS02 MG N/A N/A P80339 39019034
    18 9b00:15 (2.8) BS03 ZN N/A N/A P80339 39019034
    19 9b00:16 (2.8) BS01 rna N/A N/A P35871 39019034
    20 9b00:16 (2.8) BS02 MG N/A N/A P35871 39019034
    21 9b00:16 (2.8) BS03 ZN N/A N/A P35871 39019034
    22 9b00:17 (2.8) BS01 rna N/A N/A P80340 39019034
    23 9b00:17 (2.8) BS02 MG N/A N/A P80340 39019034
    24 9b00:17 (2.8) BS03 MG N/A N/A P80340 39019034
    25 9b00:18 (2.8) BS01 rna N/A N/A Q5SKU1 39019034
    26 9b00:18 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    27 9b00:18 (2.8) BS03 MG N/A N/A Q5SKU1 39019034
    28 9b00:18 (2.8) BS04 MG N/A N/A Q5SKU1 39019034
    29 9b00:19 (2.8) BS01 rna N/A N/A Q5SHR2 39019034
    30 9b00:19 (2.8) BS02 ZN N/A N/A Q5SHR2 39019034
    31 9b00:1D (2.8) BS01 rna N/A N/A P60405 39019034
    32 9b00:1D (2.8) BS02 rna N/A N/A P60405 39019034
    33 9b00:1D (2.8) BS03 MG N/A N/A P60405 39019034
    34 9b00:1D (2.8) BS04 MG N/A N/A P60405 39019034
    35 9b00:1D (2.8) BS05 MG N/A N/A P60405 39019034
    36 9b00:1D (2.8) BS06 MG N/A N/A P60405 39019034
    37 9b00:1D (2.8) BS07 MG N/A N/A P60405 39019034
    38 9b00:1D (2.8) BS08 MG N/A N/A P60405 39019034
    39 9b00:1D (2.8) BS09 MG N/A N/A P60405 39019034
    40 9b00:1D (2.8) BS10 MG N/A N/A P60405 39019034
    41 9b00:1D (2.8) BS11 MG N/A N/A P60405 39019034
    42 9b00:1D (2.8) BS12 MG N/A N/A P60405 39019034
    43 9b00:1D (2.8) BS13 MG N/A N/A P60405 39019034
    44 9b00:1E (2.8) BS01 rna N/A N/A Q5SHN8 39019034
    45 9b00:1E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    46 9b00:1E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    47 9b00:1E (2.8) BS04 MG N/A N/A Q5SHN8 39019034
    48 9b00:1E (2.8) BS05 MG N/A N/A Q5SHN8 39019034
    49 9b00:1F (2.8) BS01 rna N/A N/A Q5SHN9 39019034
    50 9b00:1F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    51 9b00:1F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    52 9b00:1F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    53 9b00:1F (2.8) BS05 MG N/A N/A Q5SHN9 39019034
    54 9b00:1F (2.8) BS06 MG N/A N/A Q5SHN9 39019034
    55 9b00:1F (2.8) BS07 MG N/A N/A Q5SHN9 39019034
    56 9b00:1F (2.8) BS08 MG N/A N/A Q5SHN9 39019034
    57 9b00:1F (2.8) BS09 MG N/A N/A Q5SHN9 39019034
    58 9b00:1F (2.8) BS10 MG N/A N/A Q5SHN9 39019034
    59 9b00:1G (2.8) BS01 rna N/A N/A Q5SHQ0 39019034
    60 9b00:1G (2.8) BS02 rna N/A N/A Q5SHQ0 39019034
    61 9b00:1G (2.8) BS03 rna N/A N/A Q5SHQ0 39019034
    62 9b00:1G (2.8) BS04 MG N/A N/A Q5SHQ0 39019034
    63 9b00:1H (2.8) BS01 rna N/A N/A P0DOY8 39019034
    64 9b00:1I (2.8) BS01 rna N/A N/A Q5SLQ1 39019034
    65 9b00:1N (2.8) BS01 rna N/A N/A P60488 39019034
    66 9b00:1N (2.8) BS02 MG N/A N/A P60488 39019034
    67 9b00:1N (2.8) BS03 MG N/A N/A P60488 39019034
    68 9b00:1N (2.8) BS04 MG N/A N/A P60488 39019034
    69 9b00:1O (2.8) BS01 rna N/A N/A Q5SHP8 39019034
    70 9b00:1O (2.8) BS02 rna N/A N/A Q5SHP8 39019034
    71 9b00:1P (2.8) BS01 rna N/A N/A Q5SHQ7 39019034
    72 9b00:1P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    73 9b00:1P (2.8) BS03 MG N/A N/A Q5SHQ7 39019034
    74 9b00:1P (2.8) BS04 MG N/A N/A Q5SHQ7 39019034
    75 9b00:1P (2.8) BS05 MG N/A N/A Q5SHQ7 39019034
    76 9b00:1P (2.8) BS06 MG N/A N/A Q5SHQ7 39019034
    77 9b00:1Q (2.8) BS01 rna N/A N/A P60489 39019034
    78 9b00:1Q (2.8) BS02 rna N/A N/A P60489 39019034
    79 9b00:1Q (2.8) BS03 rna N/A N/A P60489 39019034
    80 9b00:1Q (2.8) BS04 MG N/A N/A P60489 39019034
    81 9b00:1Q (2.8) BS05 MG N/A N/A P60489 39019034
    82 9b00:1Q (2.8) BS06 MG N/A N/A P60489 39019034
    83 9b00:1R (2.8) BS01 rna N/A N/A Q9Z9H5 39019034
    84 9b00:1R (2.8) BS02 MG N/A N/A Q9Z9H5 39019034
    85 9b00:1R (2.8) BS03 MG N/A N/A Q9Z9H5 39019034
    86 9b00:1S (2.8) BS01 rna N/A N/A Q5SHQ4 39019034
    87 9b00:1S (2.8) BS02 rna N/A N/A Q5SHQ4 39019034
    88 9b00:1S (2.8) BS03 MG N/A N/A Q5SHQ4 39019034
    89 9b00:1S (2.8) BS04 MG N/A N/A Q5SHQ4 39019034
    90 9b00:1T (2.8) BS01 rna N/A N/A P60490 39019034
    91 9b00:1T (2.8) BS02 rna N/A N/A P60490 39019034
    92 9b00:1U (2.8) BS01 rna N/A N/A P60491 39019034
    93 9b00:1U (2.8) BS02 MG N/A N/A P60491 39019034
    94 9b00:1U (2.8) BS03 MG N/A N/A P60491 39019034
    95 9b00:1U (2.8) BS04 MG N/A N/A P60491 39019034
    96 9b00:1U (2.8) BS05 MG N/A N/A P60491 39019034
    97 9b00:1U (2.8) BS06 MG N/A N/A P60491 39019034
    98 9b00:1U (2.8) BS07 MG N/A N/A P60491 39019034
    99 9b00:1V (2.8) BS01 rna N/A N/A P60492 39019034
    100 9b00:1V (2.8) BS02 MG N/A N/A P60492 39019034
    101 9b00:1V (2.8) BS03 MG N/A N/A P60492 39019034
    102 9b00:1V (2.8) BS04 MG N/A N/A P60492 39019034
    103 9b00:1V (2.8) BS05 MG N/A N/A P60492 39019034
    104 9b00:1V (2.8) BS06 MG N/A N/A P60492 39019034
    105 9b00:1V (2.8) BS07 MG N/A N/A P60492 39019034
    106 9b00:1W (2.8) BS01 rna N/A N/A Q5SHP3 39019034
    107 9b00:1W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    108 9b00:1W (2.8) BS03 MG N/A N/A Q5SHP3 39019034
    109 9b00:1W (2.8) BS04 MG N/A N/A Q5SHP3 39019034
    110 9b00:1W (2.8) BS05 MG N/A N/A Q5SHP3 39019034
    111 9b00:1X (2.8) BS01 rna N/A N/A Q5SHP0 39019034
    112 9b00:1X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    113 9b00:1X (2.8) BS03 MG N/A N/A Q5SHP0 39019034
    114 9b00:1X (2.8) BS04 MG N/A N/A Q5SHP0 39019034
    115 9b00:1X (2.8) BS05 MG N/A N/A Q5SHP0 39019034
    116 9b00:1X (2.8) BS06 MG N/A N/A Q5SHP0 39019034
    117 9b00:1Y (2.8) BS01 rna N/A N/A Q5SHP9 39019034
    118 9b00:1Y (2.8) BS02 MG N/A N/A Q5SHP9 39019034
    119 9b00:1Y (2.8) BS03 ZN N/A N/A Q5SHP9 39019034
    120 9b00:1Z (2.8) BS01 rna N/A N/A Q5SHZ1 39019034
    121 9b00:1Z (2.8) BS02 rna N/A N/A Q5SHZ1 39019034
    122 9b00:1Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    123 9b00:1b (2.8) BS01 rna N/A N/A P80371 39019034
    124 9b00:1b (2.8) BS02 MG N/A N/A P80371 39019034
    125 9b00:1c (2.8) BS01 rna N/A N/A P80372 39019034
    126 9b00:1d (2.8) BS01 rna N/A N/A P80373 39019034
    127 9b00:1d (2.8) BS02 SF4 N/A N/A P80373 39019034
    128 9b00:1e (2.8) BS01 rna N/A N/A Q5SHQ5 39019034
    129 9b00:1f (2.8) BS01 rna N/A N/A Q5SLP8 39019034
    130 9b00:1g (2.8) BS01 rna N/A N/A P17291 39019034
    131 9b00:1g (2.8) BS02 rna N/A N/A P17291 39019034
    132 9b00:1h (2.8) BS01 rna N/A N/A P0DOY9 39019034
    133 9b00:1i (2.8) BS01 rna N/A N/A P80374 39019034
    134 9b00:1i (2.8) BS02 rna N/A N/A P80374 39019034
    135 9b00:1j (2.8) BS01 rna N/A N/A Q5SHN7 39019034
    136 9b00:1k (2.8) BS01 rna N/A N/A P80376 39019034
    137 9b00:1k (2.8) BS02 MG N/A N/A P80376 39019034
    138 9b00:1l (2.8) BS01 rna N/A N/A Q5SHN3 39019034
    139 9b00:1m (2.8) BS01 rna N/A N/A P80377 39019034
    140 9b00:1m (2.8) BS02 rna N/A N/A P80377 39019034
    141 9b00:1m (2.8) BS03 rna N/A N/A P80377 39019034
    142 9b00:1m (2.8) BS04 rna N/A N/A P80377 39019034
    143 9b00:1m (2.8) BS05 MG N/A N/A P80377 39019034
    144 9b00:1n (2.8) BS01 rna N/A N/A P0DOY6 39019034
    145 9b00:1n (2.8) BS02 MG N/A N/A P0DOY6 39019034
    146 9b00:1n (2.8) BS03 ZN N/A N/A P0DOY6 39019034
    147 9b00:1o (2.8) BS01 rna N/A N/A Q5SJ76 39019034
    148 9b00:1o (2.8) BS02 rna N/A N/A Q5SJ76 39019034
    149 9b00:1p (2.8) BS01 rna N/A N/A Q5SJH3 39019034
    150 9b00:1q (2.8) BS01 rna N/A N/A P0DOY7 39019034
    151 9b00:1r (2.8) BS01 rna N/A N/A Q5SLQ0 39019034
    152 9b00:1s (2.8) BS01 rna N/A N/A Q5SHP2 39019034
    153 9b00:1t (2.8) BS01 rna N/A N/A P80380 39019034
    154 9b00:1t (2.8) BS02 MG N/A N/A P80380 39019034
    155 9b00:20 (2.8) BS01 rna N/A N/A P60493 39019034
    156 9b00:20 (2.8) BS02 rna N/A N/A P60493 39019034
    157 9b00:21 (2.8) BS01 rna N/A N/A P60494 39019034
    158 9b00:21 (2.8) BS02 rna N/A N/A P60494 39019034
    159 9b00:21 (2.8) BS03 MG N/A N/A P60494 39019034
    160 9b00:22 (2.8) BS01 rna N/A N/A Q5SHP6 39019034
    161 9b00:23 (2.8) BS01 rna N/A N/A Q5SHQ6 39019034
    162 9b00:23 (2.8) BS02 rna N/A N/A Q5SHQ6 39019034
    163 9b00:23 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    164 9b00:24 (2.8) BS01 rna N/A N/A Q5SJE1 39019034
    165 9b00:24 (2.8) BS02 ZN N/A N/A Q5SJE1 39019034
    166 9b00:25 (2.8) BS01 rna N/A N/A P80339 39019034
    167 9b00:25 (2.8) BS02 ZN N/A N/A P80339 39019034
    168 9b00:26 (2.8) BS01 rna N/A N/A P35871 39019034
    169 9b00:26 (2.8) BS02 ZN N/A N/A P35871 39019034
    170 9b00:27 (2.8) BS01 rna N/A N/A P80340 39019034
    171 9b00:27 (2.8) BS02 MG N/A N/A P80340 39019034
    172 9b00:28 (2.8) BS01 rna N/A N/A Q5SKU1 39019034
    173 9b00:28 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    174 9b00:29 (2.8) BS01 rna N/A N/A Q5SHR2 39019034
    175 9b00:29 (2.8) BS02 ZN N/A N/A Q5SHR2 39019034
    176 9b00:2D (2.8) BS01 rna N/A N/A P60405 39019034
    177 9b00:2D (2.8) BS02 rna N/A N/A P60405 39019034
    178 9b00:2D (2.8) BS03 MG N/A N/A P60405 39019034
    179 9b00:2D (2.8) BS04 MG N/A N/A P60405 39019034
    180 9b00:2D (2.8) BS05 MG N/A N/A P60405 39019034
    181 9b00:2D (2.8) BS06 MG N/A N/A P60405 39019034
    182 9b00:2E (2.8) BS01 rna N/A N/A Q5SHN8 39019034
    183 9b00:2E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    184 9b00:2E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    185 9b00:2F (2.8) BS01 rna N/A N/A Q5SHN9 39019034
    186 9b00:2F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    187 9b00:2F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    188 9b00:2F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    189 9b00:2G (2.8) BS01 rna N/A N/A Q5SHQ0 39019034
    190 9b00:2G (2.8) BS02 rna N/A N/A Q5SHQ0 39019034
    191 9b00:2G (2.8) BS03 rna N/A N/A Q5SHQ0 39019034
    192 9b00:2H (2.8) BS01 rna N/A N/A P0DOY8 39019034
    193 9b00:2I (2.8) BS01 rna N/A N/A Q5SLQ1 39019034
    194 9b00:2N (2.8) BS01 rna N/A N/A P60488 39019034
    195 9b00:2O (2.8) BS01 rna N/A N/A Q5SHP8 39019034
    196 9b00:2O (2.8) BS02 rna N/A N/A Q5SHP8 39019034
    197 9b00:2O (2.8) BS03 MG N/A N/A Q5SHP8 39019034
    198 9b00:2P (2.8) BS01 rna N/A N/A Q5SHQ7 39019034
    199 9b00:2P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    200 9b00:2Q (2.8) BS01 rna N/A N/A P60489 39019034
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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