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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8z99:A (3.2) BS01 rna N/A N/A N/A 39143216
    2 8z99:A (3.2) BS02 ZN N/A N/A N/A 39143216
    3 8z99:B (3.2) BS01 rna N/A N/A N/A 39143216
    4 8z99:B (3.2) BS02 rna N/A N/A N/A 39143216
    5 8z99:B (3.2) BS03 ZN N/A N/A N/A 39143216
    6 8z99:C (3.2) BS01 rna N/A N/A N/A 39143216
    7 8z99:C (3.2) BS02 rna N/A N/A N/A 39143216
    8 8z99:C (3.2) BS03 ZN N/A N/A N/A 39143216
    9 8z99:D (3.2) BS01 rna N/A N/A N/A 39143216
    10 8z99:D (3.2) BS02 rna N/A N/A N/A 39143216
    11 8z99:D (3.2) BS03 ZN N/A N/A N/A 39143216
    12 8z99:E (3.2) BS01 rna N/A N/A N/A 39143216
    13 8z99:E (3.2) BS02 rna N/A N/A N/A 39143216
    14 8z99:E (3.2) BS03 ZN N/A N/A N/A 39143216
    15 8z99:F (3.2) BS01 rna N/A N/A N/A 39143216
    16 8z99:F (3.2) BS02 rna N/A N/A N/A 39143216
    17 8z99:F (3.2) BS03 ZN N/A N/A N/A 39143216
    18 8z99:G (3.2) BS01 rna N/A N/A N/A 39143216
    19 8z99:H (3.2) BS01 rna N/A N/A N/A 39143216
    20 8z99:H (3.2) BS02 ZN N/A N/A N/A 39143216
    21 8z99:I (3.2) BS01 rna N/A N/A N/A 39143216
    22 8z99:J (3.2) BS01 rna N/A N/A N/A 39143216
    23 8z99:J (3.2) BS02 rna N/A N/A N/A 39143216
    24 8z99:J (3.2) BS03 ZN N/A N/A N/A 39143216
    25 8z99:K (3.2) BS01 rna N/A N/A N/A 39143216
    26 8z99:L (3.2) BS01 rna N/A N/A N/A 39143216
    27 8z99:P (3.2) BS01 rna N/A N/A N/A 39143216
    28 8z99:P (3.2) BS02 rna N/A N/A N/A 39143216
    29 8z99:P (3.2) BS03 ZN N/A N/A N/A 39143216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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