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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8x19:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    2 8x19:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    3 8x19:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    4 8x19:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    5 8x19:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    6 8x19:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    7 8x19:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    8 8x19:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    9 8x19:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    10 8x19:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    11 8x19:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    12 8x19:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    13 8x19:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    14 8x19:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    15 8x19:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    16 8x19:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    17 8x19:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    18 8x19:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    19 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    20 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    21 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    22 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    23 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    24 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    25 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    26 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    27 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    28 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    29 8x19:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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