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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wkp:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 38599770
    2 8wkp:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 38599770
    3 8wkp:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 38599770
    4 8wkp:AS2P (4.62) BS04 UNK ? GO:0003735 ... P39478 38599770
    5 8wkp:AS2P (4.62) BS05 UNK ? GO:0003735 ... P39478 38599770
    6 8wkp:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    7 8wkp:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 38599770
    8 8wkp:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 38599770
    9 8wkp:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 38599770
    10 8wkp:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 38599770
    11 8wkp:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 38599770
    12 8wkp:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    13 8wkp:AS7P (4.62) BS01 rna ? GO:0000028 ... P17198 38599770
    14 8wkp:AS8E (4.62) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    15 8wkp:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 38599770
    16 8wkp:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 38599770
    17 8wkp:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 38599770
    18 8wkp:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 38599770
    19 8wkp:S11P (4.62) BS02 rna ? GO:0003735 ... P39469 38599770
    20 8wkp:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 38599770
    21 8wkp:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 38599770
    22 8wkp:S14P (4.62) BS01 rna ? GO:0003723 ... O05635 38599770
    23 8wkp:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    24 8wkp:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    25 8wkp:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    26 8wkp:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    27 8wkp:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    28 8wkp:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    29 8wkp:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    30 8wkp:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    31 8wkp:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    32 8wkp:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    33 8wkp:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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