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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 276 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8vtx:10 (2.4) BS01 rna N/A N/A P60493 39039256
    2 8vtx:10 (2.4) BS02 rna N/A N/A P60493 39039256
    3 8vtx:10 (2.4) BS03 rna N/A N/A P60493 39039256
    4 8vtx:10 (2.4) BS04 MG N/A N/A P60493 39039256
    5 8vtx:10 (2.4) BS05 MG N/A N/A P60493 39039256
    6 8vtx:10 (2.4) BS06 MG N/A N/A P60493 39039256
    7 8vtx:11 (2.4) BS01 rna N/A N/A P60494 39039256
    8 8vtx:11 (2.4) BS02 rna N/A N/A P60494 39039256
    9 8vtx:11 (2.4) BS03 MG N/A N/A P60494 39039256
    10 8vtx:12 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    11 8vtx:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    12 8vtx:13 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    13 8vtx:13 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    14 8vtx:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    15 8vtx:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    16 8vtx:14 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    17 8vtx:14 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    18 8vtx:15 (2.4) BS01 rna N/A N/A P80339 39039256
    19 8vtx:15 (2.4) BS02 MG N/A N/A P80339 39039256
    20 8vtx:15 (2.4) BS03 ZN N/A N/A P80339 39039256
    21 8vtx:16 (2.4) BS01 rna N/A N/A P35871 39039256
    22 8vtx:16 (2.4) BS02 MG N/A N/A P35871 39039256
    23 8vtx:16 (2.4) BS03 MG N/A N/A P35871 39039256
    24 8vtx:16 (2.4) BS04 ZN N/A N/A P35871 39039256
    25 8vtx:17 (2.4) BS01 rna N/A N/A P80340 39039256
    26 8vtx:17 (2.4) BS02 MG N/A N/A P80340 39039256
    27 8vtx:17 (2.4) BS03 MG N/A N/A P80340 39039256
    28 8vtx:17 (2.4) BS04 MG N/A N/A P80340 39039256
    29 8vtx:18 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    30 8vtx:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    31 8vtx:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    32 8vtx:19 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    33 8vtx:19 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    34 8vtx:1D (2.4) BS01 rna N/A N/A P60405 39039256
    35 8vtx:1D (2.4) BS02 rna N/A N/A P60405 39039256
    36 8vtx:1D (2.4) BS03 MG N/A N/A P60405 39039256
    37 8vtx:1D (2.4) BS04 MG N/A N/A P60405 39039256
    38 8vtx:1D (2.4) BS05 MG N/A N/A P60405 39039256
    39 8vtx:1D (2.4) BS06 MG N/A N/A P60405 39039256
    40 8vtx:1D (2.4) BS07 MG N/A N/A P60405 39039256
    41 8vtx:1D (2.4) BS08 MG N/A N/A P60405 39039256
    42 8vtx:1D (2.4) BS09 MG N/A N/A P60405 39039256
    43 8vtx:1D (2.4) BS10 MG N/A N/A P60405 39039256
    44 8vtx:1D (2.4) BS11 MG N/A N/A P60405 39039256
    45 8vtx:1D (2.4) BS12 MG N/A N/A P60405 39039256
    46 8vtx:1E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    47 8vtx:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    48 8vtx:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    49 8vtx:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    50 8vtx:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    51 8vtx:1F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    52 8vtx:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    53 8vtx:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    54 8vtx:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    55 8vtx:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    56 8vtx:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    57 8vtx:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    58 8vtx:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    59 8vtx:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    60 8vtx:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    61 8vtx:1F (2.4) BS11 MG N/A N/A Q5SHN9 39039256
    62 8vtx:1G (2.4) BS01 rna N/A N/A Q5SHQ0 39039256
    63 8vtx:1G (2.4) BS02 rna N/A N/A Q5SHQ0 39039256
    64 8vtx:1G (2.4) BS03 rna N/A N/A Q5SHQ0 39039256
    65 8vtx:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    66 8vtx:1H (2.4) BS01 rna N/A N/A P0DOY8 39039256
    67 8vtx:1I (2.4) BS01 rna N/A N/A Q5SLQ1 39039256
    68 8vtx:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    69 8vtx:1N (2.4) BS01 rna N/A N/A P60488 39039256
    70 8vtx:1N (2.4) BS02 MG N/A N/A P60488 39039256
    71 8vtx:1N (2.4) BS03 MG N/A N/A P60488 39039256
    72 8vtx:1N (2.4) BS04 MG N/A N/A P60488 39039256
    73 8vtx:1O (2.4) BS01 rna N/A N/A Q5SHP8 39039256
    74 8vtx:1O (2.4) BS02 rna N/A N/A Q5SHP8 39039256
    75 8vtx:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    76 8vtx:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    77 8vtx:1P (2.4) BS01 rna N/A N/A Q5SHQ7 39039256
    78 8vtx:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    79 8vtx:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    80 8vtx:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    81 8vtx:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    82 8vtx:1P (2.4) BS06 MG N/A N/A Q5SHQ7 39039256
    83 8vtx:1Q (2.4) BS01 rna N/A N/A P60489 39039256
    84 8vtx:1Q (2.4) BS02 rna N/A N/A P60489 39039256
    85 8vtx:1Q (2.4) BS03 rna N/A N/A P60489 39039256
    86 8vtx:1Q (2.4) BS04 rna N/A N/A P60489 39039256
    87 8vtx:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    88 8vtx:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    89 8vtx:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    90 8vtx:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    91 8vtx:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    92 8vtx:1R (2.4) BS01 rna N/A N/A Q9Z9H5 39039256
    93 8vtx:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    94 8vtx:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    95 8vtx:1R (2.4) BS04 MG N/A N/A Q9Z9H5 39039256
    96 8vtx:1S (2.4) BS01 rna N/A N/A Q5SHQ4 39039256
    97 8vtx:1S (2.4) BS02 rna N/A N/A Q5SHQ4 39039256
    98 8vtx:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    99 8vtx:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    100 8vtx:1T (2.4) BS01 rna N/A N/A P60490 39039256
    101 8vtx:1T (2.4) BS02 rna N/A N/A P60490 39039256
    102 8vtx:1U (2.4) BS01 rna N/A N/A P60491 39039256
    103 8vtx:1U (2.4) BS02 MG N/A N/A P60491 39039256
    104 8vtx:1U (2.4) BS03 MG N/A N/A P60491 39039256
    105 8vtx:1U (2.4) BS04 MG N/A N/A P60491 39039256
    106 8vtx:1U (2.4) BS05 MG N/A N/A P60491 39039256
    107 8vtx:1U (2.4) BS06 MG N/A N/A P60491 39039256
    108 8vtx:1U (2.4) BS07 MG N/A N/A P60491 39039256
    109 8vtx:1U (2.4) BS08 MG N/A N/A P60491 39039256
    110 8vtx:1U (2.4) BS09 MG N/A N/A P60491 39039256
    111 8vtx:1V (2.4) BS01 rna N/A N/A P60492 39039256
    112 8vtx:1V (2.4) BS02 MG N/A N/A P60492 39039256
    113 8vtx:1V (2.4) BS03 MG N/A N/A P60492 39039256
    114 8vtx:1V (2.4) BS04 MG N/A N/A P60492 39039256
    115 8vtx:1V (2.4) BS05 MG N/A N/A P60492 39039256
    116 8vtx:1V (2.4) BS06 MG N/A N/A P60492 39039256
    117 8vtx:1V (2.4) BS07 MG N/A N/A P60492 39039256
    118 8vtx:1W (2.4) BS01 rna N/A N/A Q5SHP3 39039256
    119 8vtx:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    120 8vtx:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    121 8vtx:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    122 8vtx:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    123 8vtx:1W (2.4) BS06 MG N/A N/A Q5SHP3 39039256
    124 8vtx:1X (2.4) BS01 rna N/A N/A Q5SHP0 39039256
    125 8vtx:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    126 8vtx:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    127 8vtx:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    128 8vtx:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    129 8vtx:1Y (2.4) BS01 rna N/A N/A Q5SHP9 39039256
    130 8vtx:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    131 8vtx:1Y (2.4) BS03 ZN N/A N/A Q5SHP9 39039256
    132 8vtx:1Z (2.4) BS01 rna N/A N/A Q5SHZ1 39039256
    133 8vtx:1Z (2.4) BS02 rna N/A N/A Q5SHZ1 39039256
    134 8vtx:1Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    135 8vtx:1b (2.4) BS01 rna N/A N/A P80371 39039256
    136 8vtx:1c (2.4) BS01 rna N/A N/A P80372 39039256
    137 8vtx:1d (2.4) BS01 rna N/A N/A P80373 39039256
    138 8vtx:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    139 8vtx:1e (2.4) BS01 rna N/A N/A Q5SHQ5 39039256
    140 8vtx:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    141 8vtx:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    142 8vtx:1f (2.4) BS01 rna N/A N/A Q5SLP8 39039256
    143 8vtx:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    144 8vtx:1g (2.4) BS01 rna N/A N/A P17291 39039256
    145 8vtx:1g (2.4) BS02 rna N/A N/A P17291 39039256
    146 8vtx:1h (2.4) BS01 rna N/A N/A P0DOY9 39039256
    147 8vtx:1i (2.4) BS01 rna N/A N/A P80374 39039256
    148 8vtx:1i (2.4) BS02 rna N/A N/A P80374 39039256
    149 8vtx:1j (2.4) BS01 rna N/A N/A Q5SHN7 39039256
    150 8vtx:1k (2.4) BS01 rna N/A N/A P80376 39039256
    151 8vtx:1k (2.4) BS02 MG N/A N/A P80376 39039256
    152 8vtx:1l (2.4) BS01 rna N/A N/A Q5SHN3 39039256
    153 8vtx:1l (2.4) BS02 rna N/A N/A Q5SHN3 39039256
    154 8vtx:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    155 8vtx:1m (2.4) BS01 rna N/A N/A P80377 39039256
    156 8vtx:1m (2.4) BS02 rna N/A N/A P80377 39039256
    157 8vtx:1m (2.4) BS03 rna N/A N/A P80377 39039256
    158 8vtx:1m (2.4) BS04 MG N/A N/A P80377 39039256
    159 8vtx:1n (2.4) BS01 rna N/A N/A P0DOY6 39039256
    160 8vtx:1n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    161 8vtx:1o (2.4) BS01 rna N/A N/A Q5SJ76 39039256
    162 8vtx:1o (2.4) BS02 rna N/A N/A Q5SJ76 39039256
    163 8vtx:1p (2.4) BS01 rna N/A N/A Q5SJH3 39039256
    164 8vtx:1q (2.4) BS01 rna N/A N/A P0DOY7 39039256
    165 8vtx:1r (2.4) BS01 rna N/A N/A Q5SLQ0 39039256
    166 8vtx:1s (2.4) BS01 rna N/A N/A Q5SHP2 39039256
    167 8vtx:1t (2.4) BS01 rna N/A N/A P80380 39039256
    168 8vtx:1t (2.4) BS02 MG N/A N/A P80380 39039256
    169 8vtx:20 (2.4) BS01 rna N/A N/A P60493 39039256
    170 8vtx:20 (2.4) BS02 rna N/A N/A P60493 39039256
    171 8vtx:20 (2.4) BS03 rna N/A N/A P60493 39039256
    172 8vtx:21 (2.4) BS01 rna N/A N/A P60494 39039256
    173 8vtx:21 (2.4) BS02 rna N/A N/A P60494 39039256
    174 8vtx:22 (2.4) BS01 rna N/A N/A Q5SHP6 39039256
    175 8vtx:23 (2.4) BS01 rna N/A N/A Q5SHQ6 39039256
    176 8vtx:23 (2.4) BS02 rna N/A N/A Q5SHQ6 39039256
    177 8vtx:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    178 8vtx:24 (2.4) BS01 rna N/A N/A Q5SJE1 39039256
    179 8vtx:24 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    180 8vtx:25 (2.4) BS01 rna N/A N/A P80339 39039256
    181 8vtx:25 (2.4) BS02 ZN N/A N/A P80339 39039256
    182 8vtx:26 (2.4) BS01 rna N/A N/A P35871 39039256
    183 8vtx:26 (2.4) BS02 MG N/A N/A P35871 39039256
    184 8vtx:26 (2.4) BS03 ZN N/A N/A P35871 39039256
    185 8vtx:27 (2.4) BS01 rna N/A N/A P80340 39039256
    186 8vtx:27 (2.4) BS02 MG N/A N/A P80340 39039256
    187 8vtx:27 (2.4) BS03 MG N/A N/A P80340 39039256
    188 8vtx:28 (2.4) BS01 rna N/A N/A Q5SKU1 39039256
    189 8vtx:28 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    190 8vtx:29 (2.4) BS01 rna N/A N/A Q5SHR2 39039256
    191 8vtx:29 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    192 8vtx:2D (2.4) BS01 rna N/A N/A P60405 39039256
    193 8vtx:2D (2.4) BS02 rna N/A N/A P60405 39039256
    194 8vtx:2D (2.4) BS03 MG N/A N/A P60405 39039256
    195 8vtx:2D (2.4) BS04 MG N/A N/A P60405 39039256
    196 8vtx:2D (2.4) BS05 MG N/A N/A P60405 39039256
    197 8vtx:2E (2.4) BS01 rna N/A N/A Q5SHN8 39039256
    198 8vtx:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    199 8vtx:2F (2.4) BS01 rna N/A N/A Q5SHN9 39039256
    200 8vtx:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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