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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8viw:A (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    2 8viw:A (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    3 8viw:A (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    4 8viw:A (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    5 8viw:A (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    6 8viw:A (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    7 8viw:A (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    8 8viw:B (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    9 8viw:B (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    10 8viw:B (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    11 8viw:B (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    12 8viw:B (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    13 8viw:B (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    14 8viw:B (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    15 8viw:C (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    16 8viw:C (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    17 8viw:C (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    18 8viw:C (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    19 8viw:C (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    20 8viw:C (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    21 8viw:C (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    22 8viw:D (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    23 8viw:D (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    24 8viw:D (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    25 8viw:D (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    26 8viw:D (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    27 8viw:D (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    28 8viw:D (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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