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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uua:1 (2.7) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    2 8uua:2 (2.7) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    3 8uua:3 (2.7) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    4 8uua:4 (2.7) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    5 8uua:4 (2.7) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    6 8uua:5 (2.7) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    7 8uua:5 (2.7) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    8 8uua:6 (2.7) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    9 8uua:6 (2.7) BS02 MG ? GO:0003735 ... A0A660JKZ6 38407413
    10 8uua:7 (2.7) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    11 8uua:8 (2.7) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    12 8uua:8 (2.7) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    13 8uua:C (2.7) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    14 8uua:C (2.7) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    15 8uua:D (2.7) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    16 8uua:D (2.7) BS02 MG ? GO:0003735 ... A0A0U5ADD0 38407413
    17 8uua:E (2.7) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    18 8uua:E (2.7) BS02 MG ? GO:0003735 ... A0A0U4VSH7 38407413
    19 8uua:F (2.7) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    20 8uua:F (2.7) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    21 8uua:G (2.7) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    22 8uua:L (2.7) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    23 8uua:M (2.7) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    24 8uua:M (2.7) BS02 MG ? GO:0003735 ... A0A0U5AP82 38407413
    25 8uua:N (2.7) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    26 8uua:O (2.7) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    27 8uua:O (2.7) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    28 8uua:P (2.7) BS01 rna ? GO:0003735 ... A0A0U5AWM7 38407413
    29 8uua:Q (2.7) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    30 8uua:Q (2.7) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    31 8uua:R (2.7) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    32 8uua:S (2.7) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    33 8uua:T (2.7) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    34 8uua:U (2.7) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    35 8uua:V (2.7) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    36 8uua:V (2.7) BS02 MG ? GO:0000027 ... A0A0U4MTC5 38407413
    37 8uua:W (2.7) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    38 8uua:Y (2.7) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    39 8uua:Z (2.7) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    40 8uua:Z (2.7) BS02 MG ? GO:0003735 ... A0A660JJV9 38407413
    41 8uua:v (2.7) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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