Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uu7:1 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    2 8uu7:2 (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    3 8uu7:3 (3.2) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    4 8uu7:4 (3.2) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    5 8uu7:4 (3.2) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    6 8uu7:5 (3.2) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    7 8uu7:5 (3.2) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    8 8uu7:6 (3.2) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    9 8uu7:7 (3.2) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    10 8uu7:8 (3.2) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    11 8uu7:8 (3.2) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    12 8uu7:C (3.2) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    13 8uu7:D (3.2) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    14 8uu7:E (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    15 8uu7:F (3.2) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    16 8uu7:F (3.2) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    17 8uu7:G (3.2) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    18 8uu7:L (3.2) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    19 8uu7:M (3.2) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    20 8uu7:M (3.2) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    21 8uu7:N (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    22 8uu7:O (3.2) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    23 8uu7:P (3.2) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    24 8uu7:Q (3.2) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    25 8uu7:Q (3.2) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    26 8uu7:R (3.2) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    27 8uu7:R (3.2) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    28 8uu7:S (3.2) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    29 8uu7:T (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    30 8uu7:U (3.2) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    31 8uu7:V (3.2) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    32 8uu7:W (3.2) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    33 8uu7:Y (3.2) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    34 8uu7:Y (3.2) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    35 8uu7:Z (3.2) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    36 8uu7:b (3.2) BS01 rna N/A GO:0003735 ... N/A 38407413
    37 8uu7:c (3.2) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    38 8uu7:d (3.2) BS01 rna N/A GO:0003723 ... N/A 38407413
    39 8uu7:e (3.2) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    40 8uu7:f (3.2) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    41 8uu7:g (3.2) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    42 8uu7:g (3.2) BS02 rna ? GO:0000028 ... A0A660JPE1 38407413
    43 8uu7:h (3.2) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    44 8uu7:i (3.2) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    45 8uu7:j (3.2) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    46 8uu7:j (3.2) BS02 MG ? GO:0000049 ... A0A0U5A730 38407413
    47 8uu7:k (3.2) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    48 8uu7:l (3.2) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    49 8uu7:m (3.2) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    50 8uu7:n (3.2) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    51 8uu7:n (3.2) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    52 8uu7:o (3.2) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    53 8uu7:o (3.2) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    54 8uu7:p (3.2) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    55 8uu7:q (3.2) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    56 8uu7:r (3.2) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    57 8uu7:s (3.2) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    58 8uu7:t (3.2) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    59 8uu7:v (3.2) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    60 8uu7:w (3.2) BS01 rna ? GO:0005737 ... A0A660JMK7 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218