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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ugh:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    2 8ugh:1D (2.1) BS01 SF4 N/A N/A A0A8D1TTB3 38811722
    3 8ugh:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    4 8ugh:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    5 8ugh:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    6 8ugh:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    7 8ugh:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8 8ugh:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    9 8ugh:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    10 8ugh:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    11 8ugh:1I (2.1) BS03 AYA N/A GO:0003954 ... A0A286ZUN9 38811722
    12 8ugh:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    13 8ugh:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    14 8ugh:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    15 8ugh:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    16 8ugh:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    17 8ugh:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    18 8ugh:1n (2.1) BS01 EHZ N/A N/A K7GSE5 38811722
    19 8ugh:1q (2.1) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    20 8ugh:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    21 8ugh:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    22 8ugh:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    23 8ugh:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    24 8ugh:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    25 8ugh:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    26 8ugh:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    27 8ugh:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    28 8ugh:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    29 8ugh:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    30 8ugh:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    31 8ugh:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    32 8ugh:4B (2.1) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    33 8ugh:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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