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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 250 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ud6:10 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    2 8ud6:10 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    3 8ud6:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38359125
    4 8ud6:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38359125
    5 8ud6:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38359125
    6 8ud6:11 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    7 8ud6:11 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    8 8ud6:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    9 8ud6:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    10 8ud6:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    11 8ud6:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    12 8ud6:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    13 8ud6:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38359125
    14 8ud6:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    15 8ud6:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    16 8ud6:15 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    17 8ud6:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38359125
    18 8ud6:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38359125
    19 8ud6:16 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    20 8ud6:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38359125
    21 8ud6:16 (2.7) BS03 ZN ? GO:0000049 ... P35871 38359125
    22 8ud6:17 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    23 8ud6:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    24 8ud6:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38359125
    25 8ud6:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    26 8ud6:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    27 8ud6:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    28 8ud6:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    29 8ud6:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    30 8ud6:1D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    31 8ud6:1D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    32 8ud6:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    33 8ud6:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    34 8ud6:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    35 8ud6:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    36 8ud6:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38359125
    37 8ud6:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38359125
    38 8ud6:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38359125
    39 8ud6:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38359125
    40 8ud6:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38359125
    41 8ud6:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38359125
    42 8ud6:1D (2.7) BS13 MG ? GO:0002181 ... P60405 38359125
    43 8ud6:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    44 8ud6:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    45 8ud6:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    46 8ud6:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    47 8ud6:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    48 8ud6:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    49 8ud6:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    50 8ud6:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    51 8ud6:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    52 8ud6:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    53 8ud6:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    54 8ud6:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    55 8ud6:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    56 8ud6:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    57 8ud6:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    58 8ud6:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    59 8ud6:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 38359125
    60 8ud6:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    61 8ud6:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    62 8ud6:1N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    63 8ud6:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38359125
    64 8ud6:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    65 8ud6:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    66 8ud6:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    67 8ud6:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    68 8ud6:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    69 8ud6:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    70 8ud6:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    71 8ud6:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    72 8ud6:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    73 8ud6:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    74 8ud6:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    75 8ud6:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    76 8ud6:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 38359125
    77 8ud6:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    78 8ud6:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    79 8ud6:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38359125
    80 8ud6:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38359125
    81 8ud6:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    82 8ud6:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    83 8ud6:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    84 8ud6:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    85 8ud6:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    86 8ud6:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    87 8ud6:1T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    88 8ud6:1T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    89 8ud6:1T (2.7) BS03 MG ? GO:0003735 ... P60490 38359125
    90 8ud6:1U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    91 8ud6:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    92 8ud6:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38359125
    93 8ud6:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38359125
    94 8ud6:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38359125
    95 8ud6:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38359125
    96 8ud6:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38359125
    97 8ud6:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38359125
    98 8ud6:1U (2.7) BS09 MG ? GO:0000027 ... P60491 38359125
    99 8ud6:1U (2.7) BS10 MG ? GO:0000027 ... P60491 38359125
    100 8ud6:1V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    101 8ud6:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    102 8ud6:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38359125
    103 8ud6:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38359125
    104 8ud6:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38359125
    105 8ud6:1V (2.7) BS06 MG ? GO:0003723 ... P60492 38359125
    106 8ud6:1V (2.7) BS07 MG ? GO:0003723 ... P60492 38359125
    107 8ud6:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    108 8ud6:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    109 8ud6:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    110 8ud6:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    111 8ud6:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    112 8ud6:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    113 8ud6:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    114 8ud6:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    115 8ud6:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    116 8ud6:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    117 8ud6:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    118 8ud6:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    119 8ud6:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    120 8ud6:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    121 8ud6:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    122 8ud6:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    123 8ud6:1b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    124 8ud6:1c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    125 8ud6:1d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    126 8ud6:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 38359125
    127 8ud6:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    128 8ud6:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    129 8ud6:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38359125
    130 8ud6:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    131 8ud6:1g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    132 8ud6:1g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    133 8ud6:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    134 8ud6:1i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    135 8ud6:1i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    136 8ud6:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    137 8ud6:1k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    138 8ud6:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    139 8ud6:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    140 8ud6:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    141 8ud6:1m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    142 8ud6:1m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    143 8ud6:1m (2.7) BS03 rna ? GO:0000049 ... P80377 38359125
    144 8ud6:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38359125
    145 8ud6:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    146 8ud6:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    147 8ud6:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    148 8ud6:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    149 8ud6:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    150 8ud6:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    151 8ud6:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    152 8ud6:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    153 8ud6:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    154 8ud6:1t (2.7) BS02 MG ? GO:0003723 ... P80380 38359125
    155 8ud6:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    156 8ud6:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    157 8ud6:20 (2.7) BS03 rna ? GO:0003735 ... P60493 38359125
    158 8ud6:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    159 8ud6:21 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    160 8ud6:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    161 8ud6:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    162 8ud6:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    163 8ud6:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    164 8ud6:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    165 8ud6:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    166 8ud6:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    167 8ud6:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 38359125
    168 8ud6:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    169 8ud6:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 38359125
    170 8ud6:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    171 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    172 8ud6:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    173 8ud6:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    174 8ud6:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    175 8ud6:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    176 8ud6:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    177 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    178 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    179 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    180 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    181 8ud6:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    182 8ud6:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    183 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    184 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    185 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    186 8ud6:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    187 8ud6:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    188 8ud6:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    189 8ud6:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    190 8ud6:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    191 8ud6:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    192 8ud6:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    193 8ud6:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    194 8ud6:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    195 8ud6:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    196 8ud6:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    197 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    198 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    199 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    200 8ud6:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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