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BioLiP Library
Download all results in tab-seperated text for 232 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8t8b:10 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    2 8t8b:10 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    3 8t8b:10 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    4 8t8b:10 (2.65) BS04 MG ? GO:0003735 ... P60493 37433044
    5 8t8b:10 (2.65) BS05 MG ? GO:0003735 ... P60493 37433044
    6 8t8b:10 (2.65) BS06 MG ? GO:0003735 ... P60493 37433044
    7 8t8b:11 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    8 8t8b:11 (2.65) BS02 MG ? GO:0003735 ... P60494 37433044
    9 8t8b:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    10 8t8b:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    11 8t8b:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    12 8t8b:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    13 8t8b:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    14 8t8b:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    15 8t8b:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    16 8t8b:15 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    17 8t8b:15 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    18 8t8b:15 (2.65) BS03 MG ? GO:0003735 ... P80339 37433044
    19 8t8b:15 (2.65) BS04 MG ? GO:0003735 ... P80339 37433044
    20 8t8b:15 (2.65) BS05 MG ? GO:0003735 ... P80339 37433044
    21 8t8b:15 (2.65) BS06 ZN ? GO:0003735 ... P80339 37433044
    22 8t8b:16 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    23 8t8b:16 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    24 8t8b:17 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    25 8t8b:17 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    26 8t8b:17 (2.65) BS03 MG ? GO:0003735 ... P80340 37433044
    27 8t8b:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    28 8t8b:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    29 8t8b:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    30 8t8b:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 37433044
    31 8t8b:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    32 8t8b:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    33 8t8b:1D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    34 8t8b:1D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    35 8t8b:1D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    36 8t8b:1D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    37 8t8b:1D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    38 8t8b:1D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    39 8t8b:1D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    40 8t8b:1D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    41 8t8b:1D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    42 8t8b:1D (2.65) BS10 MG ? GO:0002181 ... P60405 37433044
    43 8t8b:1D (2.65) BS11 MG ? GO:0002181 ... P60405 37433044
    44 8t8b:1D (2.65) BS12 MG ? GO:0002181 ... P60405 37433044
    45 8t8b:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    46 8t8b:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    47 8t8b:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    48 8t8b:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    49 8t8b:1E (2.65) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    50 8t8b:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    51 8t8b:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    52 8t8b:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    53 8t8b:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    54 8t8b:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    55 8t8b:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    56 8t8b:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    57 8t8b:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    58 8t8b:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    59 8t8b:1F (2.65) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    60 8t8b:1F (2.65) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    61 8t8b:1F (2.65) BS12 ARG ? GO:0003735 ... Q5SHN9 37433044
    62 8t8b:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    63 8t8b:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    64 8t8b:1G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    65 8t8b:1H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    66 8t8b:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    67 8t8b:1N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    68 8t8b:1N (2.65) BS02 MG ? GO:0003729 ... P60488 37433044
    69 8t8b:1N (2.65) BS03 MG ? GO:0003729 ... P60488 37433044
    70 8t8b:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    71 8t8b:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    72 8t8b:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    73 8t8b:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    74 8t8b:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    75 8t8b:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    76 8t8b:1Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    77 8t8b:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    78 8t8b:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 37433044
    79 8t8b:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 37433044
    80 8t8b:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    81 8t8b:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    82 8t8b:1R (2.65) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    83 8t8b:1R (2.65) BS04 MG ? GO:0003735 ... Q9Z9H5 37433044
    84 8t8b:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    85 8t8b:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    86 8t8b:1T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    87 8t8b:1T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    88 8t8b:1U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    89 8t8b:1U (2.65) BS02 MG ? GO:0000027 ... P60491 37433044
    90 8t8b:1U (2.65) BS03 MG ? GO:0000027 ... P60491 37433044
    91 8t8b:1U (2.65) BS04 MG ? GO:0000027 ... P60491 37433044
    92 8t8b:1U (2.65) BS05 MG ? GO:0000027 ... P60491 37433044
    93 8t8b:1U (2.65) BS06 MG ? GO:0000027 ... P60491 37433044
    94 8t8b:1V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    95 8t8b:1V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    96 8t8b:1V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    97 8t8b:1V (2.65) BS04 MG ? GO:0003723 ... P60492 37433044
    98 8t8b:1V (2.65) BS05 MG ? GO:0003723 ... P60492 37433044
    99 8t8b:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    100 8t8b:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    101 8t8b:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 37433044
    102 8t8b:1X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    103 8t8b:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 37433044
    104 8t8b:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    105 8t8b:1Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    106 8t8b:1Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    107 8t8b:1Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    108 8t8b:1b (2.65) BS01 rna ? GO:0003735 ... P80371 37433044
    109 8t8b:1b (2.65) BS02 MG ? GO:0003735 ... P80371 37433044
    110 8t8b:1c (2.65) BS01 rna ? GO:0003676 ... P80372 37433044
    111 8t8b:1d (2.65) BS01 rna ? GO:0003723 ... P80373 37433044
    112 8t8b:1d (2.65) BS02 MG ? GO:0003723 ... P80373 37433044
    113 8t8b:1d (2.65) BS03 SF4 ? GO:0003723 ... P80373 37433044
    114 8t8b:1e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    115 8t8b:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    116 8t8b:1f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    117 8t8b:1g (2.65) BS01 rna ? GO:0000028 ... P17291 37433044
    118 8t8b:1h (2.65) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    119 8t8b:1i (2.65) BS01 rna ? GO:0000049 ... P80374 37433044
    120 8t8b:1j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    121 8t8b:1k (2.65) BS01 rna ? GO:0003735 ... P80376 37433044
    122 8t8b:1k (2.65) BS02 MG ? GO:0003735 ... P80376 37433044
    123 8t8b:1l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    124 8t8b:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    125 8t8b:1m (2.65) BS01 rna ? GO:0000049 ... P80377 37433044
    126 8t8b:1m (2.65) BS02 rna ? GO:0000049 ... P80377 37433044
    127 8t8b:1m (2.65) BS03 MG ? GO:0000049 ... P80377 37433044
    128 8t8b:1n (2.65) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    129 8t8b:1n (2.65) BS02 MG ? GO:0003735 ... P0DOY6 37433044
    130 8t8b:1n (2.65) BS03 ZN ? GO:0003735 ... P0DOY6 37433044
    131 8t8b:1o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    132 8t8b:1o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    133 8t8b:1p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    134 8t8b:1q (2.65) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    135 8t8b:1r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    136 8t8b:1s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    137 8t8b:1t (2.65) BS01 rna ? GO:0003723 ... P80380 37433044
    138 8t8b:1t (2.65) BS02 MG ? GO:0003723 ... P80380 37433044
    139 8t8b:1y (2.65) BS01 rna ? GO:0005515 ... P0AD49 37433044
    140 8t8b:1y (2.65) BS02 MG ? GO:0005515 ... P0AD49 37433044
    141 8t8b:20 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    142 8t8b:20 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    143 8t8b:20 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    144 8t8b:21 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    145 8t8b:22 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    146 8t8b:23 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    147 8t8b:23 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    148 8t8b:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    149 8t8b:24 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    150 8t8b:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    151 8t8b:25 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    152 8t8b:25 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    153 8t8b:25 (2.65) BS03 ZN ? GO:0003735 ... P80339 37433044
    154 8t8b:26 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    155 8t8b:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    156 8t8b:27 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    157 8t8b:27 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    158 8t8b:28 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    159 8t8b:29 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    160 8t8b:29 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    161 8t8b:2D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    162 8t8b:2D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    163 8t8b:2D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    164 8t8b:2D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    165 8t8b:2D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    166 8t8b:2D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    167 8t8b:2D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    168 8t8b:2D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    169 8t8b:2D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    170 8t8b:2E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    171 8t8b:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    172 8t8b:2E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    173 8t8b:2E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    174 8t8b:2F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    175 8t8b:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    176 8t8b:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    177 8t8b:2G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    178 8t8b:2G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    179 8t8b:2G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    180 8t8b:2H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    181 8t8b:2I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    182 8t8b:2N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    183 8t8b:2O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    184 8t8b:2O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    185 8t8b:2P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    186 8t8b:2Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    187 8t8b:2Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    188 8t8b:2Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    189 8t8b:2Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    190 8t8b:2R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    191 8t8b:2S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    192 8t8b:2S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    193 8t8b:2T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    194 8t8b:2T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    195 8t8b:2U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    196 8t8b:2V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    197 8t8b:2V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    198 8t8b:2V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    199 8t8b:2W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    200 8t8b:2W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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