Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8t5d:0 (3.2) BS01 rna N/A N/A A0A828UBL8 38185325
    2 8t5d:1 (3.2) BS01 rna N/A N/A N/A 38185325
    3 8t5d:2 (3.2) BS01 rna N/A N/A B7MGC4 38185325
    4 8t5d:3 (3.2) BS01 rna N/A N/A N/A 38185325
    5 8t5d:4 (3.2) BS01 rna N/A N/A A0A0E2L017 38185325
    6 8t5d:C (3.2) BS01 rna N/A N/A A0A1X3JB59 38185325
    7 8t5d:D (3.2) BS01 rna N/A N/A P60438 38185325
    8 8t5d:E (3.2) BS01 rna N/A N/A A1AGK6 38185325
    9 8t5d:F (3.2) BS01 rna N/A N/A N/A 38185325
    10 8t5d:F (3.2) BS02 rna N/A N/A N/A 38185325
    11 8t5d:F (3.2) BS03 rna N/A N/A N/A 38185325
    12 8t5d:G (3.2) BS01 rna N/A N/A N/A 38185325
    13 8t5d:J (3.2) BS01 rna N/A N/A N/A 38185325
    14 8t5d:K (3.2) BS01 rna N/A N/A C3SQZ2 38185325
    15 8t5d:K (3.2) BS02 rna N/A N/A C3SQZ2 38185325
    16 8t5d:L (3.2) BS01 rna N/A N/A A0A037Y8L6 38185325
    17 8t5d:M (3.2) BS01 rna N/A N/A P0ADY7 38185325
    18 8t5d:N (3.2) BS01 rna N/A N/A A0A2T1LEK9 38185325
    19 8t5d:O (3.2) BS01 rna N/A N/A N/A 38185325
    20 8t5d:O (3.2) BS02 rna N/A N/A N/A 38185325
    21 8t5d:P (3.2) BS01 rna N/A N/A S1PSA3 38185325
    22 8t5d:P (3.2) BS02 rna N/A N/A S1PSA3 38185325
    23 8t5d:Q (3.2) BS01 rna N/A N/A N/A 38185325
    24 8t5d:R (3.2) BS01 rna N/A N/A N/A 38185325
    25 8t5d:S (3.2) BS01 rna N/A N/A P61175 38185325
    26 8t5d:T (3.2) BS01 rna N/A N/A N/A 38185325
    27 8t5d:U (3.2) BS01 rna N/A N/A N/A 38185325
    28 8t5d:V (3.2) BS01 rna N/A N/A N/A 38185325
    29 8t5d:W (3.2) BS01 rna N/A N/A C3SSG7 38185325
    30 8t5d:W (3.2) BS02 rna N/A N/A C3SSG7 38185325
    31 8t5d:X (3.2) BS01 rna N/A N/A A0A0E2KZD0 38185325
    32 8t5d:Y (3.2) BS01 rna N/A N/A N/A 38185325
    33 8t5d:Z (3.2) BS01 rna N/A N/A P0AG51 38185325
    34 8t5d:Z (3.2) BS02 rna N/A N/A P0AG51 38185325
    35 8t5d:a (3.2) BS01 rna N/A N/A N/A 38185325
    36 8t5d:b (3.2) BS01 rna N/A N/A N/A 38185325
    37 8t5d:b (3.2) BS02 rna N/A N/A N/A 38185325
    38 8t5d:c (3.2) BS01 rna N/A N/A C3SR62 38185325
    39 8t5d:d (3.2) BS01 rna N/A N/A N/A 38185325
    40 8t5d:d (3.2) BS02 rna N/A N/A N/A 38185325
    41 8t5d:e (3.2) BS01 rna N/A N/A P02358 38185325
    42 8t5d:f (3.2) BS01 rna N/A N/A P02359 38185325
    43 8t5d:g (3.2) BS01 rna N/A N/A A0A828U358 38185325
    44 8t5d:h (3.2) BS01 rna N/A N/A N/A 38185325
    45 8t5d:h (3.2) BS02 rna N/A N/A N/A 38185325
    46 8t5d:i (3.2) BS01 rna N/A N/A A0A0H3EQD3 38185325
    47 8t5d:j (3.2) BS01 rna N/A N/A P0A7R9 38185325
    48 8t5d:k (3.2) BS01 rna N/A N/A N/A 38185325
    49 8t5d:l (3.2) BS01 rna N/A N/A S1P5F8 38185325
    50 8t5d:l (3.2) BS02 rna N/A N/A S1P5F8 38185325
    51 8t5d:m (3.2) BS01 rna N/A N/A B7M1M1 38185325
    52 8t5d:n (3.2) BS01 rna N/A N/A N/A 38185325
    53 8t5d:n (3.2) BS02 rna N/A N/A N/A 38185325
    54 8t5d:o (3.2) BS01 rna N/A N/A C3SYP2 38185325
    55 8t5d:p (3.2) BS01 rna N/A N/A N/A 38185325
    56 8t5d:q (3.2) BS01 rna N/A N/A W1EY92 38185325
    57 8t5d:r (3.2) BS01 rna N/A N/A A0A7U9LGZ0 38185325
    58 8t5d:s (3.2) BS01 rna N/A N/A C3TRH7 38185325
    59 8t5d:t (3.2) BS01 rna N/A N/A A0A5C9AJ78 38185325
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218