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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8s1p:0 (1.96) BS01 rna ? GO:0003735 ... O34687 38811035
    2 8s1p:0 (1.96) BS02 ZN ? GO:0003735 ... O34687 38811035
    3 8s1p:1 (1.96) BS01 rna ? GO:0005737 ... P56849 38811035
    4 8s1p:1 (1.96) BS02 ZN ? GO:0005737 ... P56849 38811035
    5 8s1p:2 (1.96) BS01 rna ? GO:0005840 ... P05647 38811035
    6 8s1p:3 (1.96) BS01 rna ? GO:0003735 ... P55874 38811035
    7 8s1p:4 (1.96) BS01 rna ? GO:0005737 ... P20278 38811035
    8 8s1p:4 (1.96) BS02 ZN ? GO:0005737 ... P20278 38811035
    9 8s1p:6 (1.96) BS01 rna ? GO:0005840 ... Q03223 38811035
    10 8s1p:6 (1.96) BS02 ZN ? GO:0005840 ... Q03223 38811035
    11 8s1p:C (1.96) BS01 rna ? GO:0002181 ... P42919 38811035
    12 8s1p:D (1.96) BS01 rna ? GO:0003735 ... P42920 38811035
    13 8s1p:E (1.96) BS01 rna ? GO:0003735 ... P42921 38811035
    14 8s1p:F (1.96) BS01 rna ? GO:0000049 ... P12877 38811035
    15 8s1p:F (1.96) BS02 rna ? GO:0000049 ... P12877 38811035
    16 8s1p:F (1.96) BS03 rna ? GO:0000049 ... P12877 38811035
    17 8s1p:G (1.96) BS01 rna ? GO:0002181 ... P46898 38811035
    18 8s1p:J (1.96) BS01 rna ? GO:0003729 ... P70974 38811035
    19 8s1p:K (1.96) BS01 rna ? GO:0003735 ... P12875 38811035
    20 8s1p:L (1.96) BS01 rna ? GO:0003735 ... P19946 38811035
    21 8s1p:M (1.96) BS01 rna ? GO:0000049 ... P14577 38811035
    22 8s1p:M (1.96) BS02 rna ? GO:0000049 ... P14577 38811035
    23 8s1p:N (1.96) BS01 rna ? GO:0003735 ... P20277 38811035
    24 8s1p:N (1.96) BS02 MG ? GO:0003735 ... P20277 38811035
    25 8s1p:O (1.96) BS01 rna ? GO:0005737 ... P46899 38811035
    26 8s1p:O (1.96) BS02 rna ? GO:0005737 ... P46899 38811035
    27 8s1p:P (1.96) BS01 rna ? GO:0003735 ... O31742 38811035
    28 8s1p:Q (1.96) BS01 rna ? GO:0000027 ... P55873 38811035
    29 8s1p:R (1.96) BS01 rna ? GO:0003735 ... P26908 38811035
    30 8s1p:S (1.96) BS01 rna ? GO:0003735 ... P42060 38811035
    31 8s1p:T (1.96) BS01 rna ? GO:0000027 ... P42924 38811035
    32 8s1p:U (1.96) BS01 rna ? GO:0003677 ... P0CI78 38811035
    33 8s1p:V (1.96) BS01 rna ? GO:0003723 ... P71020 38811035
    34 8s1p:W (1.96) BS01 rna ? GO:0003735 ... P05657 38811035
    35 8s1p:W (1.96) BS02 rna ? GO:0003735 ... P05657 38811035
    36 8s1p:X (1.96) BS01 rna ? GO:0005840 ... P37807 38811035
    37 8s1p:Y (1.96) BS01 rna ? GO:0005840 ... P12873 38811035
    38 8s1p:Z (1.96) BS01 rna ? GO:0005840 ... P19947 38811035
    39 8s1p:Z (1.96) BS02 rna ? GO:0005840 ... P19947 38811035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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