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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rjd:1 (2.78574) BS01 rna ? GO:0005048 ... P38377 38896445
    2 8rjd:4 (2.78574) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    3 8rjd:5 (2.78574) BS01 rna ? GO:0005789 ... P16967 38896445
    4 8rjd:7 (2.78574) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    5 8rjd:A (2.78574) BS01 rna ? GO:0002181 ... G1TT27 38896445
    6 8rjd:B (2.78574) BS01 rna N/A GO:0003779 ... N/A 38896445
    7 8rjd:C (2.78574) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    8 8rjd:C (2.78574) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    9 8rjd:D (2.78574) BS01 rna ? GO:0000027 ... P19949 38896445
    10 8rjd:D (2.78574) BS02 rna ? GO:0000027 ... P19949 38896445
    11 8rjd:E (2.78574) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    12 8rjd:F (2.78574) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    13 8rjd:F (2.78574) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    14 8rjd:G (2.78574) BS01 rna ? GO:0000470 ... G1STW0 38896445
    15 8rjd:G (2.78574) BS02 rna ? GO:0000470 ... G1STW0 38896445
    16 8rjd:H (2.78574) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    17 8rjd:I (2.78574) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    18 8rjd:I (2.78574) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    19 8rjd:J (2.78574) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    20 8rjd:J (2.78574) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    21 8rjd:J (2.78574) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    22 8rjd:L (2.78574) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    23 8rjd:L (2.78574) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    24 8rjd:M (2.78574) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    25 8rjd:N (2.78574) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    26 8rjd:N (2.78574) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    27 8rjd:O (2.78574) BS01 rna ? GO:0003729 ... A0A0N8ETI8 38896445
    28 8rjd:P (2.78574) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    29 8rjd:P (2.78574) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    30 8rjd:Q (2.78574) BS01 rna ? GO:0002181 ... F6QKI9 38896445
    31 8rjd:R (2.78574) BS01 rna ? GO:0003723 ... G1TYL6 38896445
    32 8rjd:S (2.78574) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    33 8rjd:S (2.78574) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    34 8rjd:T (2.78574) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    35 8rjd:T (2.78574) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    36 8rjd:U (2.78574) BS01 rna ? GO:0002181 ... Q4R5I3 38896445
    37 8rjd:V (2.78574) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    38 8rjd:W (2.78574) BS01 rna ? GO:0000027 ... G1SE28 38896445
    39 8rjd:X (2.78574) BS01 rna ? GO:0000027 ... G1SE76 38896445
    40 8rjd:X (2.78574) BS02 rna ? GO:0000027 ... G1SE76 38896445
    41 8rjd:Y (2.78574) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    42 8rjd:Y (2.78574) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    43 8rjd:Z (2.78574) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    44 8rjd:a (2.78574) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    45 8rjd:b (2.78574) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    46 8rjd:c (2.78574) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    47 8rjd:d (2.78574) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    48 8rjd:e (2.78574) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    49 8rjd:f (2.78574) BS01 rna ? GO:0000049 ... G1SF08 38896445
    50 8rjd:g (2.78574) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    51 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    52 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    53 8rjd:h (2.78574) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    54 8rjd:h (2.78574) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    55 8rjd:i (2.78574) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    56 8rjd:j (2.78574) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    57 8rjd:j (2.78574) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    58 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    59 8rjd:k (2.78574) BS01 rna ? GO:0003735 ... G1U001 38896445
    60 8rjd:l (2.78574) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    61 8rjd:l (2.78574) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    62 8rjd:m (2.78574) BS01 rna N/A GO:0003735 ... N/A 38896445
    63 8rjd:m (2.78574) BS02 ZN N/A GO:0003735 ... N/A 38896445
    64 8rjd:o (2.78574) BS01 rna ? GO:0003735 ... G1T040 38896445
    65 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    66 8rjd:p (2.78574) BS01 rna ? GO:0003735 ... G1SY53 38896445
    67 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    68 8rjd:r (2.78574) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    69 8rjd:w (2.78574) BS01 rna ? GO:0003723 ... G1TL06 38896445
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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