Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qrk:0 (6.69) BS01 rna N/A GO:0003735 ... P82930 38969660
    2 8qrk:3 (6.69) BS01 rna N/A GO:0005515 ... Q9NWT8 38969660
    3 8qrk:B (6.69) BS01 rna N/A GO:0003735 ... Q9Y399 38969660
    4 8qrk:B (6.69) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    5 8qrk:C (6.69) BS01 rna N/A GO:0003723 ... Q96EL2 38969660
    6 8qrk:D (6.69) BS01 rna N/A GO:0003723 ... P82675 38969660
    7 8qrk:E (6.69) BS01 rna N/A GO:0003735 ... P82932 38969660
    8 8qrk:F (6.69) BS01 rna N/A GO:0000028 ... Q9Y2R9 38969660
    9 8qrk:G (6.69) BS01 rna N/A GO:0003723 ... P82933 38969660
    10 8qrk:H (6.69) BS01 rna N/A GO:0003674 ... P82664 38969660
    11 8qrk:I (6.69) BS01 rna N/A GO:0003723 ... P82912 38969660
    12 8qrk:J (6.69) BS01 rna N/A GO:0003723 ... O15235 38969660
    13 8qrk:K (6.69) BS01 rna N/A GO:0003723 ... O60783 38969660
    14 8qrk:L (6.69) BS01 rna N/A GO:0003723 ... P82914 38969660
    15 8qrk:L (6.69) BS02 NAD N/A GO:0003723 ... P82914 38969660
    16 8qrk:M (6.69) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    17 8qrk:N (6.69) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    18 8qrk:O (6.69) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    19 8qrk:O (6.69) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    20 8qrk:P (6.69) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    21 8qrk:P (6.69) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    22 8qrk:Q (6.69) BS01 rna N/A GO:0003723 ... P82921 38969660
    23 8qrk:S (6.69) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    24 8qrk:T (6.69) BS01 rna N/A GO:0003735 ... P82663 38969660
    25 8qrk:T (6.69) BS02 FES N/A GO:0003735 ... P82663 38969660
    26 8qrk:U (6.69) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    27 8qrk:V (6.69) BS01 rna N/A GO:0000049 ... Q92552 38969660
    28 8qrk:X (6.69) BS01 rna N/A GO:0003723 ... P51398 38969660
    29 8qrk:X (6.69) BS02 ATP N/A GO:0003723 ... P51398 38969660
    30 8qrk:X (6.69) BS03 GNP N/A GO:0003723 ... P51398 38969660
    31 8qrk:Z (6.69) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218