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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qo9:21 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    2 8qo9:22 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    3 8qo9:23 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    4 8qo9:2B (5.29) BS01 rna ? GO:0000398 ... P08579 38383864
    5 8qo9:2e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    6 8qo9:2f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    7 8qo9:2g (5.29) BS01 rna ? GO:0000245 ... P62308 38383864
    8 8qo9:41 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    9 8qo9:42 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    10 8qo9:43 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    11 8qo9:4b (5.29) BS01 rna ? GO:0000387 ... P14678 38383864
    12 8qo9:4e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    13 8qo9:4f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    14 8qo9:4g (5.29) BS01 rna ? GO:0000245 ... P62308 38383864
    15 8qo9:51 (5.29) BS01 rna ? GO:0000243 ... P62314 38383864
    16 8qo9:52 (5.29) BS01 rna ? GO:0000245 ... P62316 38383864
    17 8qo9:53 (5.29) BS01 rna ? GO:0000243 ... P62318 38383864
    18 8qo9:5b (5.29) BS01 rna ? GO:0000387 ... P14678 38383864
    19 8qo9:5e (5.29) BS01 rna ? GO:0000245 ... P62304 38383864
    20 8qo9:5f (5.29) BS01 rna ? GO:0000387 ... P62306 38383864
    21 8qo9:A (5.29) BS01 rna ? GO:0000244 ... Q6P2Q9 38383864
    22 8qo9:A (5.29) BS02 rna ? GO:0000244 ... Q6P2Q9 38383864
    23 8qo9:A (5.29) BS03 rna ? GO:0000244 ... Q6P2Q9 38383864
    24 8qo9:B (5.29) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38383864
    25 8qo9:B1 (5.29) BS01 rna ? GO:0000245 ... O75533 38383864
    26 8qo9:B1 (5.29) BS02 rna ? GO:0000245 ... O75533 38383864
    27 8qo9:B2 (5.29) BS01 rna ? GO:0000398 ... Q13435 38383864
    28 8qo9:B6 (5.29) BS01 rna ? GO:0000398 ... Q9Y3B4 38383864
    29 8qo9:D (5.29) BS01 rna ? GO:0000245 ... P83876 38383864
    30 8qo9:G (5.29) BS01 rna ? GO:0000245 ... Q15428 38383864
    31 8qo9:J (5.29) BS01 rna ? GO:0000244 ... O43395 38383864
    32 8qo9:K (5.29) BS01 rna ? GO:0000398 ... P55081 38383864
    33 8qo9:K (5.29) BS02 rna ? GO:0000398 ... P55081 38383864
    34 8qo9:L (5.29) BS01 rna ? GO:0000244 ... Q8WWY3 38383864
    35 8qo9:L (5.29) BS02 rna ? GO:0000244 ... Q8WWY3 38383864
    36 8qo9:M (5.29) BS01 rna ? GO:0000398 ... P55769 38383864
    37 8qo9:N (5.29) BS01 rna ? GO:0000244 ... O94906 38383864
    38 8qo9:Q (5.29) BS01 rna ? GO:0000398 ... P41223 38383864
    39 8qo9:X (5.29) BS01 rna ? GO:0000398 ... O75554 38383864
    40 8qo9:X (5.29) BS02 rna ? GO:0000398 ... O75554 38383864
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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