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BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8q7z:AA (2.5) BS01 rna N/A N/A A0A3Q2TV39 N/A
    2 8q7z:AB (2.5) BS01 rna N/A N/A A0A3Q2U825 N/A
    3 8q7z:AC (2.5) BS01 rna N/A N/A P79781 N/A
    4 8q7z:AD (2.5) BS01 rna N/A N/A N/A N/A
    5 8q7z:AE (2.5) BS01 rna N/A N/A Q5ZM66 N/A
    6 8q7z:AE (2.5) BS02 ZN N/A N/A Q5ZM66 N/A
    7 8q7z:AF (2.5) BS01 rna N/A N/A P63247 N/A
    8 8q7z:AG (2.5) BS01 rna N/A N/A A0A8V0Z8V3 N/A
    9 8q7z:AG (2.5) BS02 ZN N/A N/A A0A8V0Z8V3 N/A
    10 8q7z:AZ (2.5) BS01 rna N/A N/A P50890 N/A
    11 8q7z:Aa (2.5) BS01 rna N/A N/A A0A8V0XXX0 N/A
    12 8q7z:Ab (2.5) BS01 rna N/A N/A A0A8V0Z891 N/A
    13 8q7z:Ac (2.5) BS01 rna N/A N/A F1NPA9 N/A
    14 8q7z:Ad (2.5) BS01 rna N/A N/A P47836 N/A
    15 8q7z:Ae (2.5) BS01 rna N/A N/A G1TFM5 N/A
    16 8q7z:Ae (2.5) BS02 rna N/A N/A G1TFM5 N/A
    17 8q7z:Af (2.5) BS01 rna N/A N/A P47838 N/A
    18 8q7z:Ag (2.5) BS01 rna N/A N/A F1NN16 N/A
    19 8q7z:Ah (2.5) BS01 rna N/A N/A F1NB02 N/A
    20 8q7z:Ah (2.5) BS02 rna N/A N/A F1NB02 N/A
    21 8q7z:Ai (2.5) BS01 rna N/A N/A B7NZS8 N/A
    22 8q7z:Aj (2.5) BS01 rna N/A N/A E1C4N0 N/A
    23 8q7z:Ak (2.5) BS01 rna N/A N/A Q98TH5 N/A
    24 8q7z:Ak (2.5) BS02 MG N/A N/A Q98TH5 N/A
    25 8q7z:Al (2.5) BS01 rna N/A N/A P84175 N/A
    26 8q7z:Am (2.5) BS01 rna N/A N/A Q6ITC7 N/A
    27 8q7z:An (2.5) BS01 rna N/A N/A Q5ZHW8 N/A
    28 8q7z:An (2.5) BS02 MG N/A N/A Q5ZHW8 N/A
    29 8q7z:Ao (2.5) BS01 rna N/A N/A P62846 N/A
    30 8q7z:Ap (2.5) BS01 rna N/A N/A R4GGJ0 N/A
    31 8q7z:Aq (2.5) BS01 rna N/A N/A P08636 N/A
    32 8q7z:Ar (2.5) BS01 rna N/A N/A G1TPG3 N/A
    33 8q7z:As (2.5) BS01 rna N/A N/A N/A N/A
    34 8q7z:At (2.5) BS01 rna N/A N/A F1NH93 N/A
    35 8q7z:Av (2.5) BS01 rna N/A N/A A0A3Q3A7P6 N/A
    36 8q7z:Aw (2.5) BS01 rna N/A N/A A0A8V0XRS9 N/A
    37 8q7z:Ax (2.5) BS01 rna N/A N/A F1NF89 N/A
    38 8q7z:Ay (2.5) BS01 rna N/A N/A A0A8V1A7V4 N/A
    39 8q7z:BA (2.5) BS01 rna N/A N/A F1NIX0 N/A
    40 8q7z:BA (2.5) BS02 rna N/A N/A F1NIX0 N/A
    41 8q7z:BA (2.5) BS03 MG N/A N/A F1NIX0 N/A
    42 8q7z:BA (2.5) BS04 MG N/A N/A F1NIX0 N/A
    43 8q7z:BB (2.5) BS01 rna N/A N/A Q5ZJZ2 N/A
    44 8q7z:BB (2.5) BS02 MG N/A N/A Q5ZJZ2 N/A
    45 8q7z:BC (2.5) BS01 rna N/A N/A Q5ZII1 N/A
    46 8q7z:BC (2.5) BS02 rna N/A N/A Q5ZII1 N/A
    47 8q7z:BD (2.5) BS01 rna N/A N/A P22451 N/A
    48 8q7z:BD (2.5) BS02 rna N/A N/A P22451 N/A
    49 8q7z:BE (2.5) BS01 rna N/A N/A Q8UWG7 N/A
    50 8q7z:BF (2.5) BS01 rna N/A N/A Q5ZJ56 N/A
    51 8q7z:BF (2.5) BS02 rna N/A N/A Q5ZJ56 N/A
    52 8q7z:BG (2.5) BS01 rna N/A N/A P32429 N/A
    53 8q7z:BG (2.5) BS02 rna N/A N/A P32429 N/A
    54 8q7z:BH (2.5) BS01 rna N/A N/A A0A1D5NVI1 N/A
    55 8q7z:BH (2.5) BS02 MG N/A N/A A0A1D5NVI1 N/A
    56 8q7z:BI (2.5) BS01 rna N/A N/A Q08200 N/A
    57 8q7z:BI (2.5) BS02 rna N/A N/A Q08200 N/A
    58 8q7z:BI (2.5) BS03 MG N/A N/A Q08200 N/A
    59 8q7z:BJ (2.5) BS01 rna N/A N/A A0A1D5P3B1 N/A
    60 8q7z:BJ (2.5) BS02 rna N/A N/A A0A1D5P3B1 N/A
    61 8q7z:BL (2.5) BS01 rna N/A N/A P41125 N/A
    62 8q7z:BL (2.5) BS02 rna N/A N/A P41125 N/A
    63 8q7z:BM (2.5) BS01 rna N/A N/A Q98TF9 N/A
    64 8q7z:BN (2.5) BS01 rna N/A N/A F1NQG5 N/A
    65 8q7z:BN (2.5) BS02 rna N/A N/A F1NQG5 N/A
    66 8q7z:BN (2.5) BS03 MG N/A N/A F1NQG5 N/A
    67 8q7z:BO (2.5) BS01 rna N/A N/A N/A N/A
    68 8q7z:BP (2.5) BS01 rna N/A N/A A0A1D5PR40 N/A
    69 8q7z:BP (2.5) BS02 rna N/A N/A A0A1D5PR40 N/A
    70 8q7z:BQ (2.5) BS01 rna N/A N/A Q6EE60 N/A
    71 8q7z:BR (2.5) BS01 rna N/A N/A Q5ZKK8 N/A
    72 8q7z:BR (2.5) BS02 rna N/A N/A Q5ZKK8 N/A
    73 8q7z:BS (2.5) BS01 rna N/A N/A F1NPD3 N/A
    74 8q7z:BS (2.5) BS02 rna N/A N/A F1NPD3 N/A
    75 8q7z:BS (2.5) BS03 MG N/A N/A F1NPD3 N/A
    76 8q7z:BT (2.5) BS01 rna N/A N/A R4GIQ2 N/A
    77 8q7z:BT (2.5) BS02 rna N/A N/A R4GIQ2 N/A
    78 8q7z:BU (2.5) BS01 rna N/A N/A Q98TF8 N/A
    79 8q7z:BV (2.5) BS01 rna N/A N/A A0A8V0ZNU5 N/A
    80 8q7z:BW (2.5) BS01 rna N/A N/A A0A8V0XRE7 N/A
    81 8q7z:BX (2.5) BS01 rna N/A N/A N/A N/A
    82 8q7z:BX (2.5) BS02 rna N/A N/A N/A N/A
    83 8q7z:BY (2.5) BS01 rna N/A N/A F2Z4K6 N/A
    84 8q7z:BY (2.5) BS02 rna N/A N/A F2Z4K6 N/A
    85 8q7z:BZ (2.5) BS01 rna N/A N/A P61355 N/A
    86 8q7z:Ba (2.5) BS01 rna N/A N/A N/A N/A
    87 8q7z:Bb (2.5) BS01 rna N/A N/A A0A1L1RNZ2 N/A
    88 8q7z:Bb (2.5) BS02 MG N/A N/A A0A1L1RNZ2 N/A
    89 8q7z:Bb (2.5) BS03 MG N/A N/A A0A1L1RNZ2 N/A
    90 8q7z:Bb (2.5) BS04 MG N/A N/A A0A1L1RNZ2 N/A
    91 8q7z:Bc (2.5) BS01 rna N/A N/A P67883 N/A
    92 8q7z:Bd (2.5) BS01 rna N/A N/A A0A1L1RT94 N/A
    93 8q7z:Be (2.5) BS01 rna N/A N/A E1BVB1 N/A
    94 8q7z:Be (2.5) BS02 MG N/A N/A E1BVB1 N/A
    95 8q7z:Bf (2.5) BS01 rna N/A N/A A0A8V0YS49 N/A
    96 8q7z:Bf (2.5) BS02 MG N/A N/A A0A8V0YS49 N/A
    97 8q7z:Bg (2.5) BS01 rna N/A N/A A0A1L1S0X5 N/A
    98 8q7z:Bg (2.5) BS02 MG N/A N/A A0A1L1S0X5 N/A
    99 8q7z:Bg (2.5) BS03 ZN N/A N/A A0A1L1S0X5 N/A
    100 8q7z:Bh (2.5) BS01 rna N/A N/A Q98TF7 N/A
    101 8q7z:Bh (2.5) BS02 rna N/A N/A Q98TF7 N/A
    102 8q7z:Bi (2.5) BS01 rna N/A N/A Q98TF6 N/A
    103 8q7z:Bj (2.5) BS01 rna N/A N/A E1C810 N/A
    104 8q7z:Bj (2.5) BS02 rna N/A N/A E1C810 N/A
    105 8q7z:Bj (2.5) BS03 ZN N/A N/A E1C810 N/A
    106 8q7z:Bk (2.5) BS01 rna N/A N/A E1BU66 N/A
    107 8q7z:Bl (2.5) BS01 rna N/A N/A Q98TF5 N/A
    108 8q7z:Bl (2.5) BS02 rna N/A N/A Q98TF5 N/A
    109 8q7z:Bm (2.5) BS01 rna N/A N/A O42388 N/A
    110 8q7z:Bm (2.5) BS02 ZN N/A N/A O42388 N/A
    111 8q7z:Bo (2.5) BS01 rna N/A N/A A0A8V0YUB1 N/A
    112 8q7z:Bo (2.5) BS02 rna N/A N/A A0A8V0YUB1 N/A
    113 8q7z:Bo (2.5) BS03 MG N/A N/A A0A8V0YUB1 N/A
    114 8q7z:Bo (2.5) BS04 ZN N/A N/A A0A8V0YUB1 N/A
    115 8q7z:Bp (2.5) BS01 rna N/A N/A P32046 N/A
    116 8q7z:Bp (2.5) BS02 ZN N/A N/A P32046 N/A
    117 8q7z:Br (2.5) BS01 rna N/A N/A Q5F346 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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