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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pv3:CB (2.8) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    2 8pv3:CF (2.8) BS01 rna ? GO:0000027 ... G0S616 37921038
    3 8pv3:CH (2.8) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    4 8pv3:CH (2.8) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    5 8pv3:CH (2.8) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    6 8pv3:CH (2.8) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    7 8pv3:CI (2.8) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    8 8pv3:CJ (2.8) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    9 8pv3:CJ (2.8) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    10 8pv3:CK (2.8) BS01 rna ? GO:0000460 ... G0S081 37921038
    11 8pv3:CL (2.8) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    12 8pv3:CM (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    13 8pv3:CM (2.8) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    14 8pv3:CO (2.8) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    15 8pv3:CQ (2.8) BS01 rna ? GO:0005730 ... G0S497 37921038
    16 8pv3:CQ (2.8) BS02 ZN ? GO:0005730 ... G0S497 37921038
    17 8pv3:Cb (2.8) BS01 rna ? GO:0003676 ... G0SB32 37921038
    18 8pv3:Cb (2.8) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    19 8pv3:Cd (2.8) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    20 8pv3:Cd (2.8) BS02 MG ? GO:0005525 ... G0SBX1 37921038
    21 8pv3:Cd (2.8) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    22 8pv3:Cd (2.8) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    23 8pv3:Ce (2.8) BS01 rna ? GO:0000027 ... G0S495 37921038
    24 8pv3:Ce (2.8) BS02 rna ? GO:0000027 ... G0S495 37921038
    25 8pv3:Ce (2.8) BS03 rna ? GO:0000027 ... G0S495 37921038
    26 8pv3:Cf (2.8) BS01 rna ? GO:0000027 ... G0SF80 37921038
    27 8pv3:Cf (2.8) BS02 rna ? GO:0000027 ... G0SF80 37921038
    28 8pv3:Cg (2.8) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    29 8pv3:Cz (2.8) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    30 8pv3:Cz (2.8) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    31 8pv3:LA (2.8) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    32 8pv3:LB (2.8) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    33 8pv3:LC (2.8) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    34 8pv3:LC (2.8) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    35 8pv3:LD (2.8) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    36 8pv3:LD (2.8) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    37 8pv3:LE (2.8) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    38 8pv3:LF (2.8) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    39 8pv3:LG (2.8) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    40 8pv3:LG (2.8) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    41 8pv3:LG (2.8) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    42 8pv3:LH (2.8) BS01 rna N/A GO:0003735 ... N/A 37921038
    43 8pv3:LJ (2.8) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    44 8pv3:LJ (2.8) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    45 8pv3:LK (2.8) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    46 8pv3:LL (2.8) BS01 rna ? GO:0003723 ... G0S992 37921038
    47 8pv3:LL (2.8) BS02 rna ? GO:0003723 ... G0S992 37921038
    48 8pv3:LM (2.8) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    49 8pv3:LN (2.8) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    50 8pv3:LN (2.8) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    51 8pv3:LO (2.8) BS01 rna ? GO:0003729 ... G0SH61 37921038
    52 8pv3:LP (2.8) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    53 8pv3:LP (2.8) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    54 8pv3:LQ (2.8) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    55 8pv3:LR (2.8) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    56 8pv3:LS (2.8) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    57 8pv3:LT (2.8) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    58 8pv3:LU (2.8) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    59 8pv3:LV (2.8) BS01 rna ? GO:0003735 ... G0SI44 37921038
    60 8pv3:LX (2.8) BS01 rna ? GO:0000027 ... G0S507 37921038
    61 8pv3:LX (2.8) BS02 rna ? GO:0000027 ... G0S507 37921038
    62 8pv3:LY (2.8) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    63 8pv3:LY (2.8) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    64 8pv3:LZ (2.8) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    65 8pv3:La (2.8) BS01 rna N/A GO:0003735 ... N/A 37921038
    66 8pv3:Lc (2.8) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    67 8pv3:Ld (2.8) BS01 rna ? GO:0002181 ... G0SD68 37921038
    68 8pv3:Le (2.8) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    69 8pv3:Lf (2.8) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    70 8pv3:Lg (2.8) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    71 8pv3:Lg (2.8) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    72 8pv3:Lh (2.8) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    73 8pv3:Lh (2.8) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    74 8pv3:Li (2.8) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    75 8pv3:Lj (2.8) BS01 rna ? GO:0003723 ... G0S101 37921038
    76 8pv3:Lj (2.8) BS02 rna ? GO:0003723 ... G0S101 37921038
    77 8pv3:Lj (2.8) BS03 ZN ? GO:0003723 ... G0S101 37921038
    78 8pv3:Lk (2.8) BS01 rna ? GO:0003735 ... G0SG89 37921038
    79 8pv3:Ll (2.8) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    80 8pv3:Ll (2.8) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    81 8pv3:Lp (2.8) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    82 8pv3:Lp (2.8) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    83 8pv3:Lq (2.8) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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