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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pv2:CC (2.63) BS01 rna ? GO:0000463 ... G0SCK6 37921038
    2 8pv2:CF (2.63) BS01 rna ? GO:0000027 ... G0S616 37921038
    3 8pv2:CH (2.63) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    4 8pv2:CH (2.63) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    5 8pv2:CH (2.63) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    6 8pv2:CH (2.63) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    7 8pv2:CJ (2.63) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    8 8pv2:CJ (2.63) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    9 8pv2:CK (2.63) BS01 rna ? GO:0000460 ... G0S081 37921038
    10 8pv2:CL (2.63) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    11 8pv2:CO (2.63) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    12 8pv2:CQ (2.63) BS01 rna ? GO:0005730 ... G0S497 37921038
    13 8pv2:CQ (2.63) BS02 ZN ? GO:0005730 ... G0S497 37921038
    14 8pv2:Cb (2.63) BS01 rna ? GO:0003676 ... G0SB32 37921038
    15 8pv2:Cb (2.63) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    16 8pv2:Cd (2.63) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    17 8pv2:Cd (2.63) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    18 8pv2:Cd (2.63) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    19 8pv2:Cd (2.63) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    20 8pv2:Cf (2.63) BS01 rna ? GO:0000027 ... G0SF80 37921038
    21 8pv2:Cf (2.63) BS02 rna ? GO:0000027 ... G0SF80 37921038
    22 8pv2:Cg (2.63) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    23 8pv2:Cz (2.63) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    24 8pv2:Cz (2.63) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    25 8pv2:LA (2.63) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    26 8pv2:LB (2.63) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    27 8pv2:LC (2.63) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    28 8pv2:LC (2.63) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    29 8pv2:LD (2.63) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    30 8pv2:LD (2.63) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    31 8pv2:LE (2.63) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    32 8pv2:LF (2.63) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    33 8pv2:LG (2.63) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    34 8pv2:LG (2.63) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    35 8pv2:LH (2.63) BS01 rna N/A GO:0003735 ... N/A 37921038
    36 8pv2:LJ (2.63) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    37 8pv2:LJ (2.63) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    38 8pv2:LK (2.63) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    39 8pv2:LL (2.63) BS01 rna ? GO:0003723 ... G0S992 37921038
    40 8pv2:LL (2.63) BS02 rna ? GO:0003723 ... G0S992 37921038
    41 8pv2:LM (2.63) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    42 8pv2:LN (2.63) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    43 8pv2:LN (2.63) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    44 8pv2:LO (2.63) BS01 rna ? GO:0003729 ... G0SH61 37921038
    45 8pv2:LP (2.63) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    46 8pv2:LP (2.63) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    47 8pv2:LQ (2.63) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    48 8pv2:LR (2.63) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    49 8pv2:LS (2.63) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    50 8pv2:LT (2.63) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    51 8pv2:LU (2.63) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    52 8pv2:LV (2.63) BS01 rna ? GO:0003735 ... G0SI44 37921038
    53 8pv2:LX (2.63) BS01 rna ? GO:0000027 ... G0S507 37921038
    54 8pv2:LX (2.63) BS02 rna ? GO:0000027 ... G0S507 37921038
    55 8pv2:LY (2.63) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    56 8pv2:LY (2.63) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    57 8pv2:LZ (2.63) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    58 8pv2:La (2.63) BS01 rna N/A GO:0003735 ... N/A 37921038
    59 8pv2:Lc (2.63) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    60 8pv2:Ld (2.63) BS01 rna ? GO:0002181 ... G0SD68 37921038
    61 8pv2:Le (2.63) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    62 8pv2:Lf (2.63) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    63 8pv2:Lg (2.63) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    64 8pv2:Lg (2.63) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    65 8pv2:Lh (2.63) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    66 8pv2:Lh (2.63) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    67 8pv2:Li (2.63) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    68 8pv2:Lj (2.63) BS01 rna ? GO:0003723 ... G0S101 37921038
    69 8pv2:Lj (2.63) BS02 rna ? GO:0003723 ... G0S101 37921038
    70 8pv2:Lj (2.63) BS03 ZN ? GO:0003723 ... G0S101 37921038
    71 8pv2:Lk (2.63) BS01 rna ? GO:0003735 ... G0SG89 37921038
    72 8pv2:Ll (2.63) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    73 8pv2:Ll (2.63) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    74 8pv2:Lp (2.63) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    75 8pv2:Lp (2.63) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    76 8pv2:Lq (2.63) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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