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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pkl:0 (3.09) BS01 rna ? GO:0002181 ... P0A7Q6 38409277
    2 8pkl:0 (3.09) BS02 ZN ? GO:0002181 ... P0A7Q6 38409277
    3 8pkl:1 (3.09) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    4 8pkl:2 (3.09) BS01 rna ? GO:0000027 ... P0A7M6 38409277
    5 8pkl:3 (3.09) BS01 rna ? GO:0000027 ... P0AG51 38409277
    6 8pkl:3 (3.09) BS02 rna ? GO:0000027 ... P0AG51 38409277
    7 8pkl:4 (3.09) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    8 8pkl:4 (3.09) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    9 8pkl:4 (3.09) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    10 8pkl:5 (3.09) BS01 rna ? GO:0000027 ... P0A7N4 38409277
    11 8pkl:6 (3.09) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    12 8pkl:B (3.09) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    13 8pkl:C (3.09) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    14 8pkl:C (3.09) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    15 8pkl:D (3.09) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    16 8pkl:E (3.09) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    17 8pkl:E (3.09) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    18 8pkl:F (3.09) BS01 rna ? GO:0002181 ... P02358 38409277
    19 8pkl:G (3.09) BS01 rna ? GO:0000028 ... P02359 38409277
    20 8pkl:G (3.09) BS02 rna ? GO:0000028 ... P02359 38409277
    21 8pkl:H (3.09) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    22 8pkl:I (3.09) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    23 8pkl:I (3.09) BS02 rna ? GO:0000049 ... P0A7X3 38409277
    24 8pkl:J (3.09) BS01 rna ? GO:0000049 ... P0A7R5 38409277
    25 8pkl:K (3.09) BS01 rna ? GO:0002181 ... P0A7R9 38409277
    26 8pkl:L (3.09) BS01 rna ? GO:0000049 ... P0A7S3 38409277
    27 8pkl:M (3.09) BS01 rna ? GO:0000049 ... P0A7S9 38409277
    28 8pkl:M (3.09) BS02 rna ? GO:0000049 ... P0A7S9 38409277
    29 8pkl:N (3.09) BS01 rna ? GO:0000028 ... P0AG59 38409277
    30 8pkl:O (3.09) BS01 rna ? GO:0000028 ... P0ADZ4 38409277
    31 8pkl:O (3.09) BS02 rna ? GO:0000028 ... P0ADZ4 38409277
    32 8pkl:P (3.09) BS01 rna ? GO:0000028 ... P0A7T3 38409277
    33 8pkl:Q (3.09) BS01 rna ? GO:0000028 ... P0AG63 38409277
    34 8pkl:R (3.09) BS01 rna ? GO:0002181 ... P0A7T7 38409277
    35 8pkl:S (3.09) BS01 rna ? GO:0000028 ... P0A7U3 38409277
    36 8pkl:T (3.09) BS01 rna ? GO:0000028 ... P0A7U7 38409277
    37 8pkl:U (3.09) BS01 rna ? GO:0000028 ... P68679 38409277
    38 8pkl:a (3.09) BS01 rna ? GO:0000027 ... P0A7L0 38409277
    39 8pkl:b (3.09) BS01 rna ? GO:0000027 ... P60422 38409277
    40 8pkl:b (3.09) BS02 rna ? GO:0000027 ... P60422 38409277
    41 8pkl:c (3.09) BS01 rna ? GO:0000027 ... P60438 38409277
    42 8pkl:d (3.09) BS01 rna ? GO:0001070 ... P60723 38409277
    43 8pkl:e (3.09) BS01 rna ? GO:0000027 ... P62399 38409277
    44 8pkl:e (3.09) BS02 rna ? GO:0000027 ... P62399 38409277
    45 8pkl:e (3.09) BS03 rna ? GO:0000027 ... P62399 38409277
    46 8pkl:f (3.09) BS01 rna ? GO:0000027 ... P0AG55 38409277
    47 8pkl:g (3.09) BS01 rna ? GO:0000027 ... P0A7N9 38409277
    48 8pkl:h (3.09) BS01 rna ? GO:0000027 ... P0ADY7 38409277
    49 8pkl:h (3.09) BS02 rna ? GO:0000027 ... P0ADY7 38409277
    50 8pkl:h (3.09) BS03 rna ? GO:0000027 ... P0ADY7 38409277
    51 8pkl:i (3.09) BS01 rna ? GO:0002181 ... P0A7R1 38409277
    52 8pkl:j (3.09) BS01 rna ? GO:0002181 ... P0A7J3 38409277
    53 8pkl:k (3.09) BS01 rna ? GO:0000027 ... P0A7J7 38409277
    54 8pkl:l (3.09) BS01 rna ? GO:0002181 ... P0A7P5 38409277
    55 8pkl:m (3.09) BS01 rna ? GO:0002181 ... P0AA10 38409277
    56 8pkl:n (3.09) BS01 rna ? GO:0002181 ... P0ADY3 38409277
    57 8pkl:n (3.09) BS02 rna ? GO:0002181 ... P0ADY3 38409277
    58 8pkl:o (3.09) BS01 rna ? GO:0002181 ... P02413 38409277
    59 8pkl:p (3.09) BS01 rna N/A N/A N/A 38409277
    60 8pkl:q (3.09) BS01 rna ? GO:0000027 ... P0AG44 38409277
    61 8pkl:r (3.09) BS01 rna ? GO:0002181 ... P0C018 38409277
    62 8pkl:r (3.09) BS02 rna ? GO:0002181 ... P0C018 38409277
    63 8pkl:s (3.09) BS01 rna ? GO:0000027 ... P0A7K6 38409277
    64 8pkl:s (3.09) BS02 rna ? GO:0000027 ... P0A7K6 38409277
    65 8pkl:t (3.09) BS01 rna ? GO:0000027 ... P0A7L3 38409277
    66 8pkl:u (3.09) BS01 rna ? GO:0002181 ... P0AG48 38409277
    67 8pkl:v (3.09) BS01 rna ? GO:0002181 ... P61175 38409277
    68 8pkl:w (3.09) BS01 rna ? GO:0000027 ... P0ADZ0 38409277
    69 8pkl:x (3.09) BS01 rna ? GO:0000027 ... P60624 38409277
    70 8pkl:y (3.09) BS01 rna ? GO:0000027 ... P68919 38409277
    71 8pkl:y (3.09) BS02 rna ? GO:0000027 ... P68919 38409277
    72 8pkl:z (3.09) BS01 rna ? GO:0000027 ... P0A7L8 38409277
    73 8pkl:z (3.09) BS02 rna ? GO:0000027 ... P0A7L8 38409277
    74 8pkl:z (3.09) BS03 rna ? GO:0000027 ... P0A7L8 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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