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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pbd:A (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    2 8pbd:A (2.83) BS02 dna ? GO:0000150 ... Q06609 37919288
    3 8pbd:A (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    4 8pbd:A (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    5 8pbd:A (2.83) BS05 CA ? GO:0000150 ... Q06609 37919288
    6 8pbd:A (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    7 8pbd:A (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8 8pbd:B (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    9 8pbd:B (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    10 8pbd:B (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    11 8pbd:B (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    12 8pbd:B (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    13 8pbd:B (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    14 8pbd:B (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    15 8pbd:B (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    16 8pbd:C (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    17 8pbd:C (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    18 8pbd:C (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    19 8pbd:C (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    20 8pbd:C (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    21 8pbd:C (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    22 8pbd:C (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    23 8pbd:C (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    24 8pbd:D (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    25 8pbd:D (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    26 8pbd:D (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    27 8pbd:D (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    28 8pbd:D (2.83) BS05 CA ? GO:0000150 ... Q06609 37919288
    29 8pbd:D (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    30 8pbd:D (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    31 8pbd:E (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    32 8pbd:E (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    33 8pbd:E (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    34 8pbd:E (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    35 8pbd:E (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    36 8pbd:E (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    37 8pbd:E (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    38 8pbd:E (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    39 8pbd:F (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    40 8pbd:F (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    41 8pbd:F (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    42 8pbd:F (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    43 8pbd:F (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    44 8pbd:F (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    45 8pbd:F (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    46 8pbd:F (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    47 8pbd:G (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    48 8pbd:G (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    49 8pbd:G (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    50 8pbd:G (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    51 8pbd:G (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    52 8pbd:G (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    53 8pbd:G (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    54 8pbd:G (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    55 8pbd:H (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    56 8pbd:H (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    57 8pbd:H (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    58 8pbd:H (2.83) BS04 dna ? GO:0000150 ... Q06609 37919288
    59 8pbd:H (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    60 8pbd:H (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    61 8pbd:H (2.83) BS07 CA ? GO:0000150 ... Q06609 37919288
    62 8pbd:H (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    63 8pbd:I (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    64 8pbd:I (2.83) BS02 peptide ? GO:0000150 ... Q06609 37919288
    65 8pbd:I (2.83) BS03 dna ? GO:0000150 ... Q06609 37919288
    66 8pbd:I (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    67 8pbd:I (2.83) BS05 CA ? GO:0000150 ... Q06609 37919288
    68 8pbd:I (2.83) BS06 CA ? GO:0000150 ... Q06609 37919288
    69 8pbd:I (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    70 8pbd:J (2.83) BS01 peptide ? GO:0000150 ... Q06609 37919288
    71 8pbd:J (2.83) BS02 ATP ? GO:0000150 ... Q06609 37919288
    72 8pbd:J (2.83) BS03 CA ? GO:0000150 ... Q06609 37919288
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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