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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p8u:2 (2.23) BS01 rna ? GO:0002181 ... P04650 N/A
    2 8p8u:2 (2.23) BS02 rna ? GO:0002181 ... P04650 N/A
    3 8p8u:JT (2.23) BS01 rna ? GO:0002181 ... Q12690 N/A
    4 8p8u:JT (2.23) BS02 rna ? GO:0002181 ... Q12690 N/A
    5 8p8u:JU (2.23) BS01 rna ? GO:0000027 ... P36105 N/A
    6 8p8u:JV (2.23) BS01 rna ? GO:0002181 ... P05748 N/A
    7 8p8u:JV (2.23) BS02 rna ? GO:0002181 ... P05748 N/A
    8 8p8u:JW (2.23) BS01 rna ? GO:0000470 ... P26784 N/A
    9 8p8u:LF (2.23) BS01 rna ? GO:0002181 ... P0CX45 N/A
    10 8p8u:LG (2.23) BS01 rna ? GO:0000027 ... P14126 N/A
    11 8p8u:LH (2.23) BS01 rna ? GO:0002181 ... P10664 N/A
    12 8p8u:LH (2.23) BS02 rna ? GO:0002181 ... P10664 N/A
    13 8p8u:LI (2.23) BS01 rna ? GO:0000027 ... P26321 N/A
    14 8p8u:LI (2.23) BS02 rna ? GO:0000027 ... P26321 N/A
    15 8p8u:LJ (2.23) BS01 rna ? GO:0000027 ... Q02326 N/A
    16 8p8u:LK (2.23) BS01 rna ? GO:0000463 ... P05737 N/A
    17 8p8u:LK (2.23) BS02 rna ? GO:0000463 ... P05737 N/A
    18 8p8u:LL (2.23) BS01 rna ? GO:0000470 ... P17076 N/A
    19 8p8u:LL (2.23) BS02 rna ? GO:0000470 ... P17076 N/A
    20 8p8u:LM (2.23) BS01 rna ? GO:0002181 ... P05738 N/A
    21 8p8u:LN (2.23) BS01 rna ? GO:0000027 ... P41805 N/A
    22 8p8u:LN (2.23) BS02 rna ? GO:0000027 ... P41805 N/A
    23 8p8u:LO (2.23) BS01 rna ? GO:0000027 ... P0C0W9 N/A
    24 8p8u:LO (2.23) BS02 rna ? GO:0000027 ... P0C0W9 N/A
    25 8p8u:QO (2.23) BS01 rna ? GO:0000448 ... P05740 N/A
    26 8p8u:QO (2.23) BS02 rna ? GO:0000448 ... P05740 N/A
    27 8p8u:QP (2.23) BS01 rna ? GO:0002181 ... P0CX49 N/A
    28 8p8u:QQ (2.23) BS01 rna ? GO:0002181 ... P0CX82 N/A
    29 8p8u:QS (2.23) BS01 rna ? GO:0002181 ... P0CX23 N/A
    30 8p8u:QS (2.23) BS02 rna ? GO:0002181 ... P0CX23 N/A
    31 8p8u:QT (2.23) BS01 rna ? GO:0002181 ... Q02753 N/A
    32 8p8u:QT (2.23) BS02 rna ? GO:0002181 ... Q02753 N/A
    33 8p8u:QU (2.23) BS01 rna ? GO:0002181 ... P05749 N/A
    34 8p8u:QV (2.23) BS01 rna ? GO:0002181 ... P0CX41 N/A
    35 8p8u:QW (2.23) BS01 rna ? GO:0002181 ... P04449 N/A
    36 8p8u:QX (2.23) BS01 rna ? GO:0000027 ... P04456 N/A
    37 8p8u:QX (2.23) BS02 rna ? GO:0000027 ... P04456 N/A
    38 8p8u:QY (2.23) BS01 rna ? GO:0002181 ... P05743 N/A
    39 8p8u:QY (2.23) BS02 rna ? GO:0002181 ... P05743 N/A
    40 8p8u:QZ (2.23) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    41 8p8u:RA (2.23) BS01 rna ? GO:0002181 ... P02406 N/A
    42 8p8u:RB (2.23) BS01 rna ? GO:0002181 ... P05747 N/A
    43 8p8u:RC (2.23) BS01 rna ? GO:0002181 ... P14120 N/A
    44 8p8u:RD (2.23) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    45 8p8u:RE (2.23) BS01 rna ? GO:0002181 ... P38061 N/A
    46 8p8u:RF (2.23) BS01 rna ? GO:0000027 ... P05744 N/A
    47 8p8u:RG (2.23) BS01 rna ? GO:0002181 ... P87262 N/A
    48 8p8u:RG (2.23) BS02 ZN ? GO:0002181 ... P87262 N/A
    49 8p8u:RH (2.23) BS01 rna ? GO:0000463 ... P0CX84 N/A
    50 8p8u:RH (2.23) BS02 rna ? GO:0000463 ... P0CX84 N/A
    51 8p8u:RI (2.23) BS01 rna ? GO:0002181 ... P05745 N/A
    52 8p8u:RJ (2.23) BS01 rna ? GO:0000448 ... P49166 N/A
    53 8p8u:RJ (2.23) BS02 rna ? GO:0000448 ... P49166 N/A
    54 8p8u:RJ (2.23) BS03 ZN ? GO:0000448 ... P49166 N/A
    55 8p8u:RM (2.23) BS01 rna ? GO:0002181 ... P49167 N/A
    56 8p8u:RO (2.23) BS01 rna ? GO:0000027 ... P0CH08 N/A
    57 8p8u:RO (2.23) BS02 ZN ? GO:0000027 ... P0CH08 N/A
    58 8p8u:RQ (2.23) BS01 rna ? GO:0002181 ... P0CX27 N/A
    59 8p8u:RQ (2.23) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    60 8p8u:RT (2.23) BS01 rna ? GO:0002181 ... P0CX25 N/A
    61 8p8u:RT (2.23) BS02 ZN ? GO:0002181 ... P0CX25 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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