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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 174 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p60:KA0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    2 8p60:KA0 (14.3) BS02 rna N/A GO:0003735 ... N/A 37709902
    3 8p60:KAA (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    4 8p60:KB0 (14.3) BS01 rna ? GO:0003723 ... S7XFB1 37709902
    5 8p60:KC0 (14.3) BS01 rna ? GO:0003723 ... S7WCM8 37709902
    6 8p60:KCC (14.3) BS01 rna ? GO:0003723 ... S7WAY0 37709902
    7 8p60:KD0 (14.3) BS01 rna ? GO:0000027 ... S7XIG7 37709902
    8 8p60:KD0 (14.3) BS02 rna ? GO:0000027 ... S7XIG7 37709902
    9 8p60:KDD (14.3) BS01 rna ? GO:0002181 ... S7XW48 37709902
    10 8p60:KE0 (14.3) BS01 rna ? GO:0000027 ... S7W5S3 37709902
    11 8p60:KEE (14.3) BS01 rna ? GO:0003735 ... S7XKE0 37709902
    12 8p60:KF0 (14.3) BS01 rna ? GO:0000463 ... S7W946 37709902
    13 8p60:KF0 (14.3) BS02 rna ? GO:0000463 ... S7W946 37709902
    14 8p60:KFF (14.3) BS01 rna ? GO:0002181 ... S7W662 37709902
    15 8p60:KG0 (14.3) BS01 rna ? GO:0000470 ... S7XU63 37709902
    16 8p60:KGG (14.3) BS01 rna ? GO:0003735 ... S7W7C6 37709902
    17 8p60:KGG (14.3) BS02 ZN ? GO:0003735 ... S7W7C6 37709902
    18 8p60:KH0 (14.3) BS01 rna ? GO:0002181 ... S7XRZ9 37709902
    19 8p60:KHH (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    20 8p60:KI0 (14.3) BS01 rna ? GO:0000027 ... S7WBF8 37709902
    21 8p60:KI0 (14.3) BS02 rna ? GO:0000027 ... S7WBF8 37709902
    22 8p60:KII (14.3) BS01 rna ? GO:0002181 ... S7WED1 37709902
    23 8p60:KJ0 (14.3) BS01 rna ? GO:0003723 ... S7WB69 37709902
    24 8p60:KJ0 (14.3) BS02 rna ? GO:0003723 ... S7WB69 37709902
    25 8p60:KJJ (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    26 8p60:KJJ (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    27 8p60:KL0 (14.3) BS01 rna ? GO:0003723 ... S7XVM9 37709902
    28 8p60:KLL (14.3) BS01 rna ? GO:0003735 ... S7XTP1 37709902
    29 8p60:KM0 (14.3) BS01 rna ? N/A S7XVN9 37709902
    30 8p60:KMM (14.3) BS01 rna ? GO:0003735 ... S7XSQ3 37709902
    31 8p60:KMM (14.3) BS02 ZN ? GO:0003735 ... S7XSQ3 37709902
    32 8p60:KN0 (14.3) BS01 rna ? GO:0002181 ... S7W7A2 37709902
    33 8p60:KO0 (14.3) BS01 rna ? GO:0003729 ... S7XUD8 37709902
    34 8p60:KOO (14.3) BS01 rna ? GO:0003735 ... S7XL20 37709902
    35 8p60:KOO (14.3) BS02 ZN ? GO:0003735 ... S7XL20 37709902
    36 8p60:KP0 (14.3) BS01 rna ? GO:0002181 ... S7WDR4 37709902
    37 8p60:KPP (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    38 8p60:KPP (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    39 8p60:KQ0 (14.3) BS01 rna ? GO:0003723 ... S7WAI2 37709902
    40 8p60:KR0 (14.3) BS01 rna ? GO:0003723 ... S7WBY9 37709902
    41 8p60:KS0 (14.3) BS01 rna ? GO:0003735 ... S7WAG4 37709902
    42 8p60:KS0 (14.3) BS02 rna ? GO:0003735 ... S7WAG4 37709902
    43 8p60:KT0 (14.3) BS01 rna ? GO:0003735 ... S7W8F6 37709902
    44 8p60:KT0 (14.3) BS02 rna ? GO:0003735 ... S7W8F6 37709902
    45 8p60:KU0 (14.3) BS01 rna ? GO:0002181 ... S7W958 37709902
    46 8p60:KV0 (14.3) BS01 rna ? GO:0003735 ... S7XLC4 37709902
    47 8p60:KV0 (14.3) BS02 rna ? GO:0003735 ... S7XLC4 37709902
    48 8p60:KW0 (14.3) BS01 rna ? GO:0005840 ... S7XSY2 37709902
    49 8p60:KW0 (14.3) BS02 rna ? GO:0005840 ... S7XSY2 37709902
    50 8p60:KX0 (14.3) BS01 rna ? GO:0000027 ... S7XFW8 37709902
    51 8p60:KY0 (14.3) BS01 rna ? GO:0002181 ... S7W884 37709902
    52 8p60:KZ0 (14.3) BS01 rna ? GO:0003735 ... S7XU08 37709902
    53 8p60:LA0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    54 8p60:LA0 (14.3) BS02 rna N/A GO:0003735 ... N/A 37709902
    55 8p60:LAA (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    56 8p60:LB0 (14.3) BS01 rna ? GO:0003723 ... S7XFB1 37709902
    57 8p60:LC0 (14.3) BS01 rna ? GO:0003723 ... S7WCM8 37709902
    58 8p60:LCC (14.3) BS01 rna ? GO:0003723 ... S7WAY0 37709902
    59 8p60:LD0 (14.3) BS01 rna ? GO:0000027 ... S7XIG7 37709902
    60 8p60:LD0 (14.3) BS02 rna ? GO:0000027 ... S7XIG7 37709902
    61 8p60:LDD (14.3) BS01 rna ? GO:0002181 ... S7XW48 37709902
    62 8p60:LE0 (14.3) BS01 rna ? GO:0000027 ... S7W5S3 37709902
    63 8p60:LEE (14.3) BS01 rna ? GO:0003735 ... S7XKE0 37709902
    64 8p60:LF0 (14.3) BS01 rna ? GO:0000463 ... S7W946 37709902
    65 8p60:LF0 (14.3) BS02 rna ? GO:0000463 ... S7W946 37709902
    66 8p60:LFF (14.3) BS01 rna ? GO:0002181 ... S7W662 37709902
    67 8p60:LG0 (14.3) BS01 rna ? GO:0000470 ... S7XU63 37709902
    68 8p60:LGG (14.3) BS01 rna ? GO:0003735 ... S7W7C6 37709902
    69 8p60:LGG (14.3) BS02 ZN ? GO:0003735 ... S7W7C6 37709902
    70 8p60:LH0 (14.3) BS01 rna ? GO:0002181 ... S7XRZ9 37709902
    71 8p60:LHH (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    72 8p60:LI0 (14.3) BS01 rna ? GO:0000027 ... S7WBF8 37709902
    73 8p60:LI0 (14.3) BS02 rna ? GO:0000027 ... S7WBF8 37709902
    74 8p60:LII (14.3) BS01 rna ? GO:0002181 ... S7WED1 37709902
    75 8p60:LJ0 (14.3) BS01 rna ? GO:0003723 ... S7WB69 37709902
    76 8p60:LJ0 (14.3) BS02 rna ? GO:0003723 ... S7WB69 37709902
    77 8p60:LJJ (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    78 8p60:LJJ (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    79 8p60:LL0 (14.3) BS01 rna ? GO:0003723 ... S7XVM9 37709902
    80 8p60:LLL (14.3) BS01 rna ? GO:0003735 ... S7XTP1 37709902
    81 8p60:LM0 (14.3) BS01 rna ? N/A S7XVN9 37709902
    82 8p60:LMM (14.3) BS01 rna ? GO:0003735 ... S7XSQ3 37709902
    83 8p60:LMM (14.3) BS02 ZN ? GO:0003735 ... S7XSQ3 37709902
    84 8p60:LN0 (14.3) BS01 rna ? GO:0002181 ... S7W7A2 37709902
    85 8p60:LO0 (14.3) BS01 rna ? GO:0003729 ... S7XUD8 37709902
    86 8p60:LOO (14.3) BS01 rna ? GO:0003735 ... S7XL20 37709902
    87 8p60:LOO (14.3) BS02 ZN ? GO:0003735 ... S7XL20 37709902
    88 8p60:LP0 (14.3) BS01 rna ? GO:0002181 ... S7WDR4 37709902
    89 8p60:LPP (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    90 8p60:LPP (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    91 8p60:LQ0 (14.3) BS01 rna ? GO:0003723 ... S7WAI2 37709902
    92 8p60:LR0 (14.3) BS01 rna ? GO:0003723 ... S7WBY9 37709902
    93 8p60:LS0 (14.3) BS01 rna ? GO:0003735 ... S7WAG4 37709902
    94 8p60:LS0 (14.3) BS02 rna ? GO:0003735 ... S7WAG4 37709902
    95 8p60:LT0 (14.3) BS01 rna ? GO:0003735 ... S7W8F6 37709902
    96 8p60:LT0 (14.3) BS02 rna ? GO:0003735 ... S7W8F6 37709902
    97 8p60:LU0 (14.3) BS01 rna ? GO:0002181 ... S7W958 37709902
    98 8p60:LV0 (14.3) BS01 rna ? GO:0003735 ... S7XLC4 37709902
    99 8p60:LV0 (14.3) BS02 rna ? GO:0003735 ... S7XLC4 37709902
    100 8p60:LW0 (14.3) BS01 rna ? GO:0005840 ... S7XSY2 37709902
    101 8p60:LW0 (14.3) BS02 rna ? GO:0005840 ... S7XSY2 37709902
    102 8p60:LX0 (14.3) BS01 rna ? GO:0000027 ... S7XFW8 37709902
    103 8p60:LY0 (14.3) BS01 rna ? GO:0002181 ... S7W884 37709902
    104 8p60:LZ0 (14.3) BS01 rna ? GO:0003735 ... S7XU08 37709902
    105 8p60:MD1 (14.3) BS01 rna ? N/A S7W5K5 37709902
    106 8p60:MD2 (14.3) BS01 rna ? N/A S7W5K5 37709902
    107 8p60:RA0 (14.3) BS01 rna ? GO:0000028 ... S7W8R1 37709902
    108 8p60:RAA (14.3) BS01 rna ? GO:0003729 ... S7W9M7 37709902
    109 8p60:RAA (14.3) BS02 ZN ? GO:0003729 ... S7W9M7 37709902
    110 8p60:RB0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    111 8p60:RBB (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    112 8p60:RBB (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    113 8p60:RC0 (14.3) BS01 rna ? GO:0003723 ... S7W7R5 37709902
    114 8p60:RD0 (14.3) BS01 rna ? GO:0003723 ... S7WAW0 37709902
    115 8p60:RDD (14.3) BS01 rna ? GO:0003735 ... S7XJB1 37709902
    116 8p60:RDD (14.3) BS02 ZN ? GO:0003735 ... S7XJB1 37709902
    117 8p60:RE0 (14.3) BS01 rna ? GO:0003723 ... S7XG51 37709902
    118 8p60:REE (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    119 8p60:RF0 (14.3) BS01 rna ? GO:0000028 ... S7W4M9 37709902
    120 8p60:RFF (14.3) BS01 rna ? GO:0003735 ... S7W9X5 37709902
    121 8p60:RFF (14.3) BS02 rna ? GO:0003735 ... S7W9X5 37709902
    122 8p60:RG0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    123 8p60:RGG (14.3) BS01 rna ? GO:0001934 ... S7XVG3 37709902
    124 8p60:RH0 (14.3) BS01 rna ? GO:0003735 ... S7XV29 37709902
    125 8p60:RI0 (14.3) BS01 rna ? GO:0000462 ... S7XGW2 37709902
    126 8p60:RJ0 (14.3) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    127 8p60:RK0 (14.3) BS01 rna ? GO:0003723 ... S7XU48 37709902
    128 8p60:RL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    129 8p60:RM0 (14.3) BS01 rna ? GO:0003735 ... S7W7D2 37709902
    130 8p60:RN0 (14.3) BS01 rna ? GO:0003735 ... S7XVZ9 37709902
    131 8p60:RO0 (14.3) BS01 rna ? GO:0000028 ... S7W6I0 37709902
    132 8p60:RP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    133 8p60:RQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    134 8p60:RR0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    135 8p60:RS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    136 8p60:RT0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    137 8p60:RU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    138 8p60:RW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    139 8p60:RX0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    140 8p60:RY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    141 8p60:SA0 (14.3) BS01 rna ? GO:0000028 ... S7W8R1 37709902
    142 8p60:SAA (14.3) BS01 rna ? GO:0003729 ... S7W9M7 37709902
    143 8p60:SAA (14.3) BS02 ZN ? GO:0003729 ... S7W9M7 37709902
    144 8p60:SB0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    145 8p60:SBB (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    146 8p60:SBB (14.3) BS02 ZN N/A GO:0003735 ... N/A 37709902
    147 8p60:SC0 (14.3) BS01 rna ? GO:0003723 ... S7W7R5 37709902
    148 8p60:SD0 (14.3) BS01 rna ? GO:0003723 ... S7WAW0 37709902
    149 8p60:SDD (14.3) BS01 rna ? GO:0003735 ... S7XJB1 37709902
    150 8p60:SDD (14.3) BS02 ZN ? GO:0003735 ... S7XJB1 37709902
    151 8p60:SE0 (14.3) BS01 rna ? GO:0003723 ... S7XG51 37709902
    152 8p60:SEE (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    153 8p60:SF0 (14.3) BS01 rna ? GO:0000028 ... S7W4M9 37709902
    154 8p60:SFF (14.3) BS01 rna ? GO:0003735 ... S7W9X5 37709902
    155 8p60:SFF (14.3) BS02 rna ? GO:0003735 ... S7W9X5 37709902
    156 8p60:SG0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    157 8p60:SGG (14.3) BS01 rna ? GO:0001934 ... S7XVG3 37709902
    158 8p60:SH0 (14.3) BS01 rna ? GO:0003735 ... S7XV29 37709902
    159 8p60:SI0 (14.3) BS01 rna ? GO:0000462 ... S7XGW2 37709902
    160 8p60:SJ0 (14.3) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    161 8p60:SK0 (14.3) BS01 rna ? GO:0003723 ... S7XU48 37709902
    162 8p60:SL0 (14.3) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    163 8p60:SM0 (14.3) BS01 rna ? GO:0003735 ... S7W7D2 37709902
    164 8p60:SN0 (14.3) BS01 rna ? GO:0003735 ... S7XVZ9 37709902
    165 8p60:SO0 (14.3) BS01 rna ? GO:0000028 ... S7W6I0 37709902
    166 8p60:SP0 (14.3) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    167 8p60:SQ0 (14.3) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    168 8p60:SR0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    169 8p60:SS0 (14.3) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    170 8p60:ST0 (14.3) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    171 8p60:SU0 (14.3) BS01 rna ? GO:0005840 ... S7W986 37709902
    172 8p60:SW0 (14.3) BS01 rna ? GO:0003735 ... S7XK92 37709902
    173 8p60:SX0 (14.3) BS01 rna N/A GO:0003735 ... N/A 37709902
    174 8p60:SY0 (14.3) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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