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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p4f:A (4.0) BS01 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37369200
    2 8p4f:A (4.0) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37369200
    3 8p4f:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37369200
    4 8p4f:A (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37369200
    5 8p4f:A (4.0) BS05 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 37369200
    6 8p4f:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 37369200
    7 8p4f:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 37369200
    8 8p4f:B (4.0) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 37369200
    9 8p4f:B (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37369200
    10 8p4f:E (4.0) BS01 dna ? GO:0001054 ... I3LSI7 37369200
    11 8p4f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 37369200
    12 8p4f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 37369200
    13 8p4f:J (4.0) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 37369200
    14 8p4f:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37369200
    15 8p4f:O (4.0) BS01 rna 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    16 8p4f:O (4.0) BS02 MGT 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    17 8p4f:O (4.0) BS03 SAM 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    18 8p4f:Y (4.0) BS01 ZN ? GO:0000122 ... P63272 37369200
    19 8p4f:Z (4.0) BS01 rna ? GO:0000122 ... O00267 37369200
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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