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BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p2k:AA (2.9) BS01 rna ? GO:0000028 ... G1TZ76 37347872
    2 8p2k:AB (2.9) BS01 rna ? GO:0000028 ... G1TIB4 37347872
    3 8p2k:AC (2.9) BS01 rna ? GO:0003723 ... G1SK22 37347872
    4 8p2k:AC (2.9) BS02 ZN ? GO:0003723 ... G1SK22 37347872
    5 8p2k:AD (2.9) BS01 rna ? GO:0003735 ... G1T8A2 37347872
    6 8p2k:AE (2.9) BS01 rna ? GO:0002181 ... A0A2K5LQY6 37347872
    7 8p2k:AE (2.9) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 37347872
    8 8p2k:AF (2.9) BS01 rna ? GO:0001891 ... G1SJB4 37347872
    9 8p2k:AG (2.9) BS01 rna ? GO:0003735 ... G1U7M4 37347872
    10 8p2k:AG (2.9) BS02 ZN ? GO:0003735 ... G1U7M4 37347872
    11 8p2k:AZ (2.9) BS01 rna ? GO:0000028 ... G1TLT8 37347872
    12 8p2k:Aa (2.9) BS01 rna ? GO:0003735 ... G1SS70 37347872
    13 8p2k:Ab (2.9) BS01 rna ? GO:0003723 ... O18789 37347872
    14 8p2k:Ac (2.9) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 37347872
    15 8p2k:Ad (2.9) BS01 rna ? GO:0003723 ... G1TK17 37347872
    16 8p2k:Ae (2.9) BS01 rna ? GO:0000028 ... G1TFM5 37347872
    17 8p2k:Af (2.9) BS01 rna ? GO:0000082 ... G1TM55 37347872
    18 8p2k:Ag (2.9) BS01 rna ? GO:0003735 ... G1SVB0 37347872
    19 8p2k:Ah (2.9) BS01 rna ? GO:0000462 ... G1TJW1 37347872
    20 8p2k:Ah (2.9) BS02 rna ? GO:0000462 ... G1TJW1 37347872
    21 8p2k:Ai (2.9) BS01 rna ? GO:0003723 ... B7NZS8 37347872
    22 8p2k:Aj (2.9) BS01 rna ? GO:0003723 ... G1TPV3 37347872
    23 8p2k:Ak (2.9) BS01 rna ? GO:0003735 ... G1TRM4 37347872
    24 8p2k:Al (2.9) BS01 rna ? GO:0003735 ... G1SFR8 37347872
    25 8p2k:Am (2.9) BS01 rna ? GO:0003735 ... G1SP51 37347872
    26 8p2k:Am (2.9) BS02 rna ? GO:0003735 ... G1SP51 37347872
    27 8p2k:An (2.9) BS01 rna ? GO:0000028 ... G1T1F0 37347872
    28 8p2k:Ao (2.9) BS01 rna ? GO:0000028 ... G1U0Q2 37347872
    29 8p2k:Ao (2.9) BS02 rna ? GO:0000028 ... G1U0Q2 37347872
    30 8p2k:Ap (2.9) BS01 rna ? GO:0000462 ... G1SGX4 37347872
    31 8p2k:Aq (2.9) BS01 rna ? GO:0003735 ... G1TU13 37347872
    32 8p2k:Ar (2.9) BS01 rna ? GO:0003676 ... G1TPG3 37347872
    33 8p2k:As (2.9) BS01 rna ? GO:0000028 ... G1TN62 37347872
    34 8p2k:At (2.9) BS01 rna ? GO:0003723 ... G1SIZ2 37347872
    35 8p2k:Av (2.9) BS01 rna ? GO:0003735 ... G1TG89 37347872
    36 8p2k:Aw (2.9) BS01 rna ? GO:0003735 ... G1SZ47 37347872
    37 8p2k:Ax (2.9) BS01 rna ? GO:0003735 ... G1T3D8 37347872
    38 8p2k:Ay (2.9) BS01 rna ? GO:0003735 ... G1TDB3 37347872
    39 8p2k:Ay (2.9) BS02 rna ? GO:0003735 ... G1TDB3 37347872
    40 8p2k:BA (2.9) BS01 rna ? GO:0002181 ... F2X241 37347872
    41 8p2k:BA (2.9) BS02 rna ? GO:0002181 ... F2X241 37347872
    42 8p2k:BB (2.9) BS01 rna ? GO:0003723 ... G1TL06 37347872
    43 8p2k:BC (2.9) BS01 rna ? GO:0003723 ... G1SVW5 37347872
    44 8p2k:BC (2.9) BS02 rna ? GO:0003723 ... G1SVW5 37347872
    45 8p2k:BC (2.9) BS03 peptide ? GO:0003723 ... G1SVW5 37347872
    46 8p2k:BD (2.9) BS01 rna ? GO:0000027 ... P19949 37347872
    47 8p2k:BD (2.9) BS02 rna ? GO:0000027 ... P19949 37347872
    48 8p2k:BD (2.9) BS03 GTP ? GO:0000027 ... P19949 37347872
    49 8p2k:BD (2.9) BS04 AAC ? GO:0000027 ... P19949 37347872
    50 8p2k:BE (2.9) BS01 rna ? GO:0000027 ... G1SKF7 37347872
    51 8p2k:BF (2.9) BS01 rna ? GO:0000463 ... G1TUB1 37347872
    52 8p2k:BF (2.9) BS02 rna ? GO:0000463 ... G1TUB1 37347872
    53 8p2k:BG (2.9) BS01 rna ? GO:0000470 ... P62424 37347872
    54 8p2k:BG (2.9) BS02 rna ? GO:0000470 ... P62424 37347872
    55 8p2k:BH (2.9) BS01 rna ? GO:0002181 ... G1SWI6 37347872
    56 8p2k:BI (2.9) BS01 rna ? GO:0000027 ... B7NZQ2 37347872
    57 8p2k:BI (2.9) BS02 rna ? GO:0000027 ... B7NZQ2 37347872
    58 8p2k:BI (2.9) BS03 rna ? GO:0000027 ... B7NZQ2 37347872
    59 8p2k:BJ (2.9) BS01 rna ? GO:0003723 ... G1TUB8 37347872
    60 8p2k:BJ (2.9) BS02 rna ? GO:0003723 ... G1TUB8 37347872
    61 8p2k:BJ (2.9) BS03 rna ? GO:0003723 ... G1TUB8 37347872
    62 8p2k:BL (2.9) BS01 rna ? GO:0003723 ... G1TKB3 37347872
    63 8p2k:BL (2.9) BS02 rna ? GO:0003723 ... G1TKB3 37347872
    64 8p2k:BM (2.9) BS01 rna ? GO:0003723 ... G1SZ12 37347872
    65 8p2k:BN (2.9) BS01 rna ? GO:0002181 ... G1T0C1 37347872
    66 8p2k:BN (2.9) BS02 rna ? GO:0002181 ... G1T0C1 37347872
    67 8p2k:BO (2.9) BS01 rna ? GO:0003729 ... A0A0N8ETI8 37347872
    68 8p2k:BP (2.9) BS01 rna ? GO:0002181 ... G1SCJ6 37347872
    69 8p2k:BP (2.9) BS02 rna ? GO:0002181 ... G1SCJ6 37347872
    70 8p2k:BP (2.9) BS03 peptide ? GO:0002181 ... G1SCJ6 37347872
    71 8p2k:BQ (2.9) BS01 rna ? GO:0002181 ... F6QKI9 37347872
    72 8p2k:BR (2.9) BS01 rna ? GO:0003723 ... G1TYL6 37347872
    73 8p2k:BR (2.9) BS02 rna ? GO:0003723 ... G1TYL6 37347872
    74 8p2k:BS (2.9) BS01 rna ? GO:0003735 ... A0A1Z5LHJ5 37347872
    75 8p2k:BS (2.9) BS02 rna ? GO:0003735 ... A0A1Z5LHJ5 37347872
    76 8p2k:BT (2.9) BS01 rna ? GO:0003735 ... G1SHQ2 37347872
    77 8p2k:BT (2.9) BS02 rna ? GO:0003735 ... G1SHQ2 37347872
    78 8p2k:BU (2.9) BS01 rna ? GO:0002181 ... G1TSG1 37347872
    79 8p2k:BV (2.9) BS01 rna ? GO:0000122 ... G1T6D1 37347872
    80 8p2k:BW (2.9) BS01 rna ? GO:0000027 ... G1SE28 37347872
    81 8p2k:BW (2.9) BS02 rna ? GO:0000027 ... G1SE28 37347872
    82 8p2k:BX (2.9) BS01 rna ? GO:0000027 ... G1SE76 37347872
    83 8p2k:BX (2.9) BS02 rna ? GO:0000027 ... G1SE76 37347872
    84 8p2k:BY (2.9) BS01 rna ? GO:0002181 ... G1SQH0 37347872
    85 8p2k:BY (2.9) BS02 rna ? GO:0002181 ... G1SQH0 37347872
    86 8p2k:BZ (2.9) BS01 rna ? GO:0003735 ... G1TXF6 37347872
    87 8p2k:Ba (2.9) BS01 rna ? GO:0003735 ... G1SNY0 37347872
    88 8p2k:Bb (2.9) BS01 rna ? GO:0002181 ... G1SGR6 37347872
    89 8p2k:Bc (2.9) BS01 rna ? GO:0002181 ... G1TDL2 37347872
    90 8p2k:Bc (2.9) BS02 rna ? GO:0002181 ... G1TDL2 37347872
    91 8p2k:Bd (2.9) BS01 rna ? GO:0002181 ... G1SHG0 37347872
    92 8p2k:Be (2.9) BS01 rna ? GO:0003735 ... G1TUN8 37347872
    93 8p2k:Bf (2.9) BS01 rna ? GO:0000049 ... G1SF08 37347872
    94 8p2k:Bg (2.9) BS01 rna ? GO:0003735 ... G1TXG5 37347872
    95 8p2k:Bg (2.9) BS02 ZN ? GO:0003735 ... G1TXG5 37347872
    96 8p2k:Bh (2.9) BS01 rna ? GO:0000463 ... G1SIT5 37347872
    97 8p2k:Bh (2.9) BS02 rna ? GO:0000463 ... G1SIT5 37347872
    98 8p2k:Bi (2.9) BS01 rna ? GO:0002181 ... G1TTQ5 37347872
    99 8p2k:Bj (2.9) BS01 rna ? GO:0003723 ... U3KPD5 37347872
    100 8p2k:Bj (2.9) BS02 rna ? GO:0003723 ... U3KPD5 37347872
    101 8p2k:Bj (2.9) BS03 ZN ? GO:0003723 ... U3KPD5 37347872
    102 8p2k:Bk (2.9) BS01 rna ? GO:0003735 ... G1U001 37347872
    103 8p2k:Bl (2.9) BS01 rna ? GO:0003735 ... G1TTN1 37347872
    104 8p2k:Bl (2.9) BS02 rna ? GO:0003735 ... G1TTN1 37347872
    105 8p2k:Bl (2.9) BS03 peptide ? GO:0003735 ... G1TTN1 37347872
    106 8p2k:Bm (2.9) BS01 rna ? GO:0003723 ... A0A2I3MBB6 37347872
    107 8p2k:Bm (2.9) BS02 ZN ? GO:0003723 ... A0A2I3MBB6 37347872
    108 8p2k:Bo (2.9) BS01 rna ? GO:0003735 ... G1T040 37347872
    109 8p2k:Bo (2.9) BS02 rna ? GO:0003735 ... G1T040 37347872
    110 8p2k:Bo (2.9) BS03 ZN ? GO:0003735 ... G1T040 37347872
    111 8p2k:Bp (2.9) BS01 rna ? GO:0003735 ... G1SY53 37347872
    112 8p2k:Bp (2.9) BS02 ZN ? GO:0003735 ... G1SY53 37347872
    113 8p2k:Br (2.9) BS01 rna ? GO:0003735 ... G1U7L1 37347872
    114 8p2k:Bs (2.9) BS01 rna ? GO:0000027 ... G1SPK4 37347872
    115 8p2k:Bt (2.9) BS01 rna ? GO:0003723 ... G1SMR7 37347872
    116 8p2k:Bv (2.9) BS01 rna ? GO:0000470 ... G1SKZ8 37347872
    117 8p2k:Bv (2.9) BS02 N ? GO:0000470 ... G1SKZ8 37347872
    118 8p2k:MA (2.9) BS01 rna 3.4.11.18 GO:0004177 ... P53582 37347872
    119 8p2k:Na (2.9) BS01 rna ? GO:0000122 ... Q13765 37347872
    120 8p2k:Nb (2.9) BS01 rna ? N/A A0A7I2YQL2 37347872
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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