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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ovd:C (2.3) BS01 HEC N/A N/A A0R050 38902248
    2 8ovd:C (2.3) BS02 HEC N/A N/A A0R050 38902248
    3 8ovd:C (2.3) BS03 MQ9 N/A N/A A0R050 38902248
    4 8ovd:C (2.3) BS04 WUO N/A N/A A0R050 38902248
    5 8ovd:C (2.3) BS05 MQ9 N/A N/A A0R050 38902248
    6 8ovd:G (2.3) BS01 peptide N/A GO:0005886 ... A0R051 38902248
    7 8ovd:G (2.3) BS02 9YF N/A GO:0005886 ... A0R051 38902248
    8 8ovd:G (2.3) BS03 MQ9 N/A GO:0005886 ... A0R051 38902248
    9 8ovd:G (2.3) BS04 FES N/A GO:0005886 ... A0R051 38902248
    10 8ovd:G (2.3) BS05 IZL N/A GO:0005886 ... A0R051 38902248
    11 8ovd:G (2.3) BS06 9YF N/A GO:0005886 ... A0R051 38902248
    12 8ovd:G (2.3) BS07 MQ9 N/A GO:0005886 ... A0R051 38902248
    13 8ovd:H (2.3) BS01 peptide N/A GO:0008121 ... A0R052 38902248
    14 8ovd:H (2.3) BS02 9YF N/A GO:0008121 ... A0R052 38902248
    15 8ovd:H (2.3) BS03 MQ9 N/A GO:0008121 ... A0R052 38902248
    16 8ovd:H (2.3) BS04 MQ9 N/A GO:0008121 ... A0R052 38902248
    17 8ovd:H (2.3) BS05 WUO N/A GO:0008121 ... A0R052 38902248
    18 8ovd:H (2.3) BS06 IZL N/A GO:0008121 ... A0R052 38902248
    19 8ovd:H (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    20 8ovd:H (2.3) BS08 MQ9 N/A GO:0008121 ... A0R052 38902248
    21 8ovd:H (2.3) BS09 MQ9 N/A GO:0008121 ... A0R052 38902248
    22 8ovd:H (2.3) BS10 HEM N/A GO:0008121 ... A0R052 38902248
    23 8ovd:H (2.3) BS11 MQ9 N/A GO:0008121 ... A0R052 38902248
    24 8ovd:H (2.3) BS12 MQ9 N/A GO:0008121 ... A0R052 38902248
    25 8ovd:H (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    26 8ovd:H (2.3) BS14 9XX N/A GO:0008121 ... A0R052 38902248
    27 8ovd:I (2.3) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    28 8ovd:I (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    29 8ovd:K (2.3) BS01 MQ9 N/A GO:0004129 ... A0R056 38902248
    30 8ovd:L (2.3) BS01 MQ9 N/A GO:0004129 ... A0A2U9PNL2 38902248
    31 8ovd:L (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    32 8ovd:L (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    33 8ovd:L (2.3) BS04 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    34 8ovd:L (2.3) BS05 CA N/A GO:0004129 ... A0A2U9PNL2 38902248
    35 8ovd:M (2.3) BS01 peptide N/A GO:0005886 ... A0R051 38902248
    36 8ovd:M (2.3) BS02 FES N/A GO:0005886 ... A0R051 38902248
    37 8ovd:M (2.3) BS03 IZL N/A GO:0005886 ... A0R051 38902248
    38 8ovd:M (2.3) BS04 9YF N/A GO:0005886 ... A0R051 38902248
    39 8ovd:M (2.3) BS05 MQ9 N/A GO:0005886 ... A0R051 38902248
    40 8ovd:M (2.3) BS06 MQ9 N/A GO:0005886 ... A0R051 38902248
    41 8ovd:M (2.3) BS07 9YF N/A GO:0005886 ... A0R051 38902248
    42 8ovd:N (2.3) BS01 peptide N/A GO:0008121 ... A0R052 38902248
    43 8ovd:N (2.3) BS02 MQ9 N/A GO:0008121 ... A0R052 38902248
    44 8ovd:N (2.3) BS03 IZL N/A GO:0008121 ... A0R052 38902248
    45 8ovd:N (2.3) BS04 HEM N/A GO:0008121 ... A0R052 38902248
    46 8ovd:N (2.3) BS05 MQ9 N/A GO:0008121 ... A0R052 38902248
    47 8ovd:N (2.3) BS06 MQ9 N/A GO:0008121 ... A0R052 38902248
    48 8ovd:N (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    49 8ovd:N (2.3) BS08 MQ9 N/A GO:0008121 ... A0R052 38902248
    50 8ovd:N (2.3) BS09 MQ9 N/A GO:0008121 ... A0R052 38902248
    51 8ovd:N (2.3) BS10 9YF N/A GO:0008121 ... A0R052 38902248
    52 8ovd:N (2.3) BS11 9XX N/A GO:0008121 ... A0R052 38902248
    53 8ovd:N (2.3) BS12 MQ9 N/A GO:0008121 ... A0R052 38902248
    54 8ovd:N (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    55 8ovd:O (2.3) BS01 HEC N/A N/A A0R050 38902248
    56 8ovd:O (2.3) BS02 HEC N/A N/A A0R050 38902248
    57 8ovd:O (2.3) BS03 MQ9 N/A N/A A0R050 38902248
    58 8ovd:O (2.3) BS04 WUO N/A N/A A0R050 38902248
    59 8ovd:O (2.3) BS05 MQ9 N/A N/A A0R050 38902248
    60 8ovd:P (2.3) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    61 8ovd:P (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    62 8ovd:Q (2.3) BS01 CU N/A GO:0004129 ... A0R057 38902248
    63 8ovd:Q (2.3) BS02 CU N/A GO:0004129 ... A0R057 38902248
    64 8ovd:R (2.3) BS01 MQ9 N/A GO:0004129 ... A0A2U9PNL2 38902248
    65 8ovd:R (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    66 8ovd:R (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    67 8ovd:R (2.3) BS04 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    68 8ovd:R (2.3) BS05 CA N/A GO:0004129 ... A0A2U9PNL2 38902248
    69 8ovd:R (2.3) BS06 9XX N/A GO:0004129 ... A0A2U9PNL2 38902248
    70 8ovd:T (2.3) BS01 WUO N/A GO:0004129 ... A0R056 38902248
    71 8ovd:T (2.3) BS02 MQ9 N/A GO:0004129 ... A0R056 38902248
    72 8ovd:W (2.3) BS01 HEC N/A N/A A0R562 38902248
    73 8ovd:W (2.3) BS02 WUO N/A N/A A0R562 38902248
    74 8ovd:W (2.3) BS03 9YF N/A N/A A0R562 38902248
    75 8ovd:X (2.3) BS01 CU N/A GO:0004129 ... A0R057 38902248
    76 8ovd:X (2.3) BS02 CU N/A GO:0004129 ... A0R057 38902248
    77 8ovd:b (2.3) BS01 peptide N/A N/A A0R562 38902248
    78 8ovd:b (2.3) BS02 HEC N/A N/A A0R562 38902248
    79 8ovd:b (2.3) BS03 WUO N/A N/A A0R562 38902248
    80 8ovd:b (2.3) BS04 9YF N/A N/A A0R562 38902248
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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