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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8opl:Aa (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    2 8opl:Ab (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    3 8opl:Ac (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    4 8opl:Ad (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    5 8opl:Ae (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    6 8opl:Af (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    7 8opl:Ag (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    8 8opl:Ah (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    9 8opl:Ai (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    10 8opl:As (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    11 8opl:At (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    12 8opl:Au (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    13 8opl:Av (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    14 8opl:Aw (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    15 8opl:Ax (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    16 8opl:Ay (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    17 8opl:Az (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    18 8opl:Ba (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    19 8opl:Bk (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    20 8opl:Bl (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    21 8opl:Bm (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    22 8opl:Bn (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    23 8opl:Bo (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    24 8opl:Bp (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    25 8opl:Bq (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    26 8opl:Br (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    27 8opl:Bs (2.41) BS01 rna ? GO:0019028 ... I7DGZ0 38233506
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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