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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 349 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jze:A (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    2 8jze:A (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    3 8jze:A (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    4 8jze:A (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    5 8jze:A (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    6 8jze:A (2.99) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    7 8jze:A (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    8 8jze:A (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    9 8jze:A (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    10 8jze:A (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    11 8jze:A (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    12 8jze:A (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    13 8jze:A (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    14 8jze:A (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    15 8jze:A (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    16 8jze:A (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    17 8jze:A (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    18 8jze:A (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    19 8jze:B (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    20 8jze:B (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    21 8jze:B (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    22 8jze:B (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    23 8jze:B (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    24 8jze:B (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    25 8jze:B (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    26 8jze:B (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    27 8jze:B (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    28 8jze:B (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    29 8jze:B (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    30 8jze:B (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    31 8jze:B (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    32 8jze:B (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    33 8jze:B (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    34 8jze:B (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    35 8jze:B (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    36 8jze:D (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    37 8jze:D (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    38 8jze:D (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    39 8jze:D (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    40 8jze:D (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    41 8jze:D (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    42 8jze:D (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    43 8jze:D (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    44 8jze:D (2.99) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    45 8jze:D (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    46 8jze:D (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    47 8jze:D (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    48 8jze:D (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    49 8jze:D (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    50 8jze:D (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    51 8jze:F (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    52 8jze:F (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    53 8jze:F (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    54 8jze:F (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    55 8jze:F (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    56 8jze:F (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    57 8jze:F (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    58 8jze:F (2.99) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    59 8jze:F (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    60 8jze:F (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    61 8jze:F (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    62 8jze:F (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    63 8jze:F (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    64 8jze:F (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    65 8jze:G (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    66 8jze:G (2.99) BS02 UIX N/A GO:0009765 ... N/A 38319970
    67 8jze:G (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    68 8jze:G (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    69 8jze:G (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    70 8jze:G (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    71 8jze:G (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    72 8jze:G (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    73 8jze:G (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    74 8jze:G (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    75 8jze:G (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    76 8jze:G (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    77 8jze:G (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    78 8jze:G (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    79 8jze:G (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    80 8jze:G (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    81 8jze:G (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    82 8jze:H (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    83 8jze:H (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    84 8jze:H (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    85 8jze:H (2.99) BS04 CLA N/A GO:0009765 ... N/A 38319970
    86 8jze:H (2.99) BS05 CLA N/A GO:0009765 ... N/A 38319970
    87 8jze:H (2.99) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    88 8jze:H (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    89 8jze:H (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    90 8jze:H (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    91 8jze:H (2.99) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    92 8jze:H (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    93 8jze:H (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    94 8jze:I (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    95 8jze:I (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    96 8jze:I (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    97 8jze:I (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    98 8jze:I (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    99 8jze:I (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    100 8jze:I (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    101 8jze:I (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    102 8jze:I (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    103 8jze:I (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    104 8jze:I (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    105 8jze:I (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    106 8jze:I (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    107 8jze:I (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    108 8jze:I (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    109 8jze:I (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    110 8jze:I (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    111 8jze:I (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    112 8jze:J (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    113 8jze:J (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    114 8jze:J (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    115 8jze:J (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    116 8jze:J (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    117 8jze:J (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    118 8jze:J (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    119 8jze:J (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    120 8jze:J (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    121 8jze:J (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    122 8jze:J (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    123 8jze:J (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    124 8jze:J (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    125 8jze:J (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    126 8jze:J (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    127 8jze:K (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    128 8jze:K (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    129 8jze:K (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    130 8jze:K (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    131 8jze:K (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    132 8jze:K (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    133 8jze:K (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    134 8jze:K (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    135 8jze:K (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    136 8jze:K (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    137 8jze:K (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    138 8jze:K (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    139 8jze:K (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    140 8jze:K (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    141 8jze:K (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    142 8jze:K (2.99) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    143 8jze:K (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    144 8jze:K (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    145 8jze:K (2.99) BS19 CLA N/A GO:0009765 ... N/A 38319970
    146 8jze:L (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    147 8jze:L (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    148 8jze:L (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    149 8jze:L (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    150 8jze:L (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    151 8jze:L (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    152 8jze:L (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    153 8jze:L (2.99) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    154 8jze:L (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    155 8jze:L (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    156 8jze:L (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    157 8jze:L (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    158 8jze:L (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    159 8jze:L (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    160 8jze:L (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    161 8jze:L (2.99) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    162 8jze:L (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    163 8jze:L (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    164 8jze:L (2.99) BS19 CLA N/A GO:0009765 ... N/A 38319970
    165 8jze:M (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    166 8jze:M (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    167 8jze:M (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    168 8jze:M (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    169 8jze:M (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    170 8jze:M (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    171 8jze:M (2.99) BS07 KC1 N/A GO:0009765 ... N/A 38319970
    172 8jze:M (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    173 8jze:M (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    174 8jze:M (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    175 8jze:M (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    176 8jze:M (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    177 8jze:M (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    178 8jze:M (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    179 8jze:M (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    180 8jze:M (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    181 8jze:M (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    182 8jze:M (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    183 8jze:N (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    184 8jze:N (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    185 8jze:N (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    186 8jze:N (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    187 8jze:N (2.99) BS05 CLA N/A GO:0009765 ... N/A 38319970
    188 8jze:N (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    189 8jze:N (2.99) BS07 KC1 N/A GO:0009765 ... N/A 38319970
    190 8jze:N (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    191 8jze:N (2.99) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    192 8jze:N (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    193 8jze:N (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    194 8jze:N (2.99) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    195 8jze:O (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    196 8jze:O (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    197 8jze:O (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    198 8jze:O (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    199 8jze:O (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    200 8jze:O (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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