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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 434 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jw0:A (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    2 8jw0:A (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    3 8jw0:A (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    4 8jw0:A (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    5 8jw0:A (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    6 8jw0:A (2.9) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    7 8jw0:A (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    8 8jw0:A (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    9 8jw0:A (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    10 8jw0:A (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    11 8jw0:A (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    12 8jw0:A (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    13 8jw0:A (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    14 8jw0:A (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    15 8jw0:A (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    16 8jw0:A (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    17 8jw0:A (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    18 8jw0:A (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    19 8jw0:A (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    20 8jw0:A (2.9) BS20 DD6 N/A GO:0009765 ... N/A 38319970
    21 8jw0:A (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    22 8jw0:B (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    23 8jw0:B (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    24 8jw0:B (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    25 8jw0:B (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    26 8jw0:B (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    27 8jw0:B (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    28 8jw0:B (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    29 8jw0:B (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    30 8jw0:B (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    31 8jw0:B (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    32 8jw0:B (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    33 8jw0:B (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    34 8jw0:B (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    35 8jw0:B (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    36 8jw0:B (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    37 8jw0:B (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    38 8jw0:B (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    39 8jw0:B (2.9) BS18 DD6 N/A GO:0009765 ... N/A 38319970
    40 8jw0:B (2.9) BS19 UIX N/A GO:0009765 ... N/A 38319970
    41 8jw0:B (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    42 8jw0:B (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    43 8jw0:C (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    44 8jw0:C (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    45 8jw0:C (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    46 8jw0:C (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    47 8jw0:C (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    48 8jw0:C (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    49 8jw0:C (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    50 8jw0:C (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    51 8jw0:C (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    52 8jw0:C (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    53 8jw0:C (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    54 8jw0:C (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    55 8jw0:C (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    56 8jw0:C (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    57 8jw0:C (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    58 8jw0:D (2.9) BS01 KC1 ? GO:0009765 ... Q38689 38319970
    59 8jw0:D (2.9) BS02 PID ? GO:0009765 ... Q38689 38319970
    60 8jw0:D (2.9) BS03 PID ? GO:0009765 ... Q38689 38319970
    61 8jw0:D (2.9) BS04 DD6 ? GO:0009765 ... Q38689 38319970
    62 8jw0:D (2.9) BS05 PID ? GO:0009765 ... Q38689 38319970
    63 8jw0:D (2.9) BS06 PID ? GO:0009765 ... Q38689 38319970
    64 8jw0:D (2.9) BS07 PID ? GO:0009765 ... Q38689 38319970
    65 8jw0:D (2.9) BS08 CLA ? GO:0009765 ... Q38689 38319970
    66 8jw0:D (2.9) BS09 CLA ? GO:0009765 ... Q38689 38319970
    67 8jw0:D (2.9) BS10 KC1 ? GO:0009765 ... Q38689 38319970
    68 8jw0:D (2.9) BS11 CLA ? GO:0009765 ... Q38689 38319970
    69 8jw0:D (2.9) BS12 CLA ? GO:0009765 ... Q38689 38319970
    70 8jw0:D (2.9) BS13 CLA ? GO:0009765 ... Q38689 38319970
    71 8jw0:D (2.9) BS14 CLA ? GO:0009765 ... Q38689 38319970
    72 8jw0:D (2.9) BS15 KC1 ? GO:0009765 ... Q38689 38319970
    73 8jw0:D (2.9) BS16 CLA ? GO:0009765 ... Q38689 38319970
    74 8jw0:E (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    75 8jw0:E (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    76 8jw0:E (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    77 8jw0:E (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    78 8jw0:E (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    79 8jw0:E (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    80 8jw0:E (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    81 8jw0:E (2.9) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    82 8jw0:E (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    83 8jw0:E (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    84 8jw0:E (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    85 8jw0:E (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    86 8jw0:E (2.9) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    87 8jw0:E (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    88 8jw0:E (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    89 8jw0:E (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    90 8jw0:F (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    91 8jw0:F (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    92 8jw0:F (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    93 8jw0:F (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    94 8jw0:F (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    95 8jw0:F (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    96 8jw0:F (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    97 8jw0:F (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    98 8jw0:F (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    99 8jw0:F (2.9) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    100 8jw0:F (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    101 8jw0:F (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    102 8jw0:F (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    103 8jw0:F (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    104 8jw0:F (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    105 8jw0:F (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    106 8jw0:F (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    107 8jw0:F (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    108 8jw0:G (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    109 8jw0:G (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    110 8jw0:G (2.9) BS03 CLA N/A GO:0009765 ... N/A 38319970
    111 8jw0:G (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    112 8jw0:G (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    113 8jw0:G (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    114 8jw0:G (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    115 8jw0:G (2.9) BS08 DD6 N/A GO:0009765 ... N/A 38319970
    116 8jw0:G (2.9) BS09 PID N/A GO:0009765 ... N/A 38319970
    117 8jw0:G (2.9) BS10 PID N/A GO:0009765 ... N/A 38319970
    118 8jw0:G (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    119 8jw0:G (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    120 8jw0:G (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    121 8jw0:G (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    122 8jw0:G (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    123 8jw0:G (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    124 8jw0:G (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    125 8jw0:G (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    126 8jw0:G (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    127 8jw0:H (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    128 8jw0:H (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    129 8jw0:H (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    130 8jw0:H (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    131 8jw0:H (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    132 8jw0:H (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    133 8jw0:H (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    134 8jw0:H (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    135 8jw0:H (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    136 8jw0:H (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    137 8jw0:H (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    138 8jw0:H (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    139 8jw0:H (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    140 8jw0:H (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    141 8jw0:H (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    142 8jw0:I (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    143 8jw0:I (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    144 8jw0:I (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    145 8jw0:I (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    146 8jw0:I (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    147 8jw0:I (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    148 8jw0:I (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    149 8jw0:I (2.9) BS08 DD6 N/A GO:0009765 ... N/A 38319970
    150 8jw0:I (2.9) BS09 DD6 N/A GO:0009765 ... N/A 38319970
    151 8jw0:I (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    152 8jw0:I (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    153 8jw0:I (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    154 8jw0:I (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    155 8jw0:I (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    156 8jw0:I (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    157 8jw0:I (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    158 8jw0:I (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    159 8jw0:I (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    160 8jw0:I (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    161 8jw0:I (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    162 8jw0:I (2.9) BS21 DD6 N/A GO:0009765 ... N/A 38319970
    163 8jw0:J (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    164 8jw0:J (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    165 8jw0:J (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    166 8jw0:J (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    167 8jw0:J (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    168 8jw0:J (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    169 8jw0:J (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    170 8jw0:J (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    171 8jw0:J (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    172 8jw0:J (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    173 8jw0:J (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    174 8jw0:J (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    175 8jw0:J (2.9) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    176 8jw0:J (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    177 8jw0:K (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    178 8jw0:K (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    179 8jw0:K (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    180 8jw0:K (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    181 8jw0:K (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    182 8jw0:K (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    183 8jw0:K (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    184 8jw0:K (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    185 8jw0:K (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    186 8jw0:K (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    187 8jw0:K (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    188 8jw0:K (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    189 8jw0:K (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    190 8jw0:K (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    191 8jw0:K (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    192 8jw0:K (2.9) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    193 8jw0:K (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    194 8jw0:K (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    195 8jw0:K (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    196 8jw0:L (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    197 8jw0:L (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    198 8jw0:L (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    199 8jw0:L (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    200 8jw0:L (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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