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BioLiP
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ipb:AA (3.4) BS01 rna ? GO:0000470 ... A0A3B6RED0 38267667
    2 8ipb:AA (3.4) BS02 rna ? GO:0000470 ... A0A3B6RED0 38267667
    3 8ipb:AB (3.4) BS01 rna ? GO:0002181 ... Q5I7L5 38267667
    4 8ipb:BA (3.4) BS01 rna ? GO:0003735 ... F4YWL9 38267667
    5 8ipb:BA (3.4) BS02 rna ? GO:0003735 ... F4YWL9 38267667
    6 8ipb:BB (3.4) BS01 rna ? GO:0000463 ... Q8L805 38267667
    7 8ipb:BB (3.4) BS02 rna ? GO:0000463 ... Q8L805 38267667
    8 8ipb:CA (3.4) BS01 rna ? GO:0003735 ... A0A341XZK6 38267667
    9 8ipb:CB (3.4) BS01 rna ? GO:0000463 ... A0A3B6DM38 38267667
    10 8ipb:CB (3.4) BS02 rna ? GO:0000463 ... A0A3B6DM38 38267667
    11 8ipb:DA (3.4) BS01 rna ? GO:0002181 ... W5ECL2 38267667
    12 8ipb:DA (3.4) BS02 rna ? GO:0002181 ... W5ECL2 38267667
    13 8ipb:DA (3.4) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    14 8ipb:DB (3.4) BS01 rna ? GO:0003723 ... Q7X748 38267667
    15 8ipb:EA (3.4) BS01 rna ? GO:0003723 ... A0A3B5XX39 38267667
    16 8ipb:EA (3.4) BS02 rna ? GO:0003723 ... A0A3B5XX39 38267667
    17 8ipb:EA (3.4) BS03 rna ? GO:0003723 ... A0A3B5XX39 38267667
    18 8ipb:EB (3.4) BS01 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    19 8ipb:EB (3.4) BS02 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    20 8ipb:FA (3.4) BS01 rna ? GO:0002181 ... W5I5G5 38267667
    21 8ipb:FB (3.4) BS01 rna ? GO:0003729 ... Q5I7L1 38267667
    22 8ipb:GA (3.4) BS01 rna ? GO:0003735 ... Q5I7K4 38267667
    23 8ipb:GB (3.4) BS01 rna ? GO:0003735 ... D8L9P6 38267667
    24 8ipb:GB (3.4) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    25 8ipb:HA (3.4) BS01 rna ? GO:0002181 ... W5FEX7 38267667
    26 8ipb:HA (3.4) BS02 rna ? GO:0002181 ... W5FEX7 38267667
    27 8ipb:HB (3.4) BS01 rna ? GO:0000027 ... A0A3B6HUM3 38267667
    28 8ipb:HB (3.4) BS02 rna ? GO:0000027 ... A0A3B6HUM3 38267667
    29 8ipb:IA (3.4) BS01 rna ? GO:0003729 ... A0A3B6DCS5 38267667
    30 8ipb:JA (3.4) BS01 rna ? GO:0003723 ... A0A3B6ATQ1 38267667
    31 8ipb:JB (3.4) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38267667
    32 8ipb:KA (3.4) BS01 rna ? GO:0003735 ... W5BZZ2 38267667
    33 8ipb:KA (3.4) BS02 rna ? GO:0003735 ... W5BZZ2 38267667
    34 8ipb:KB (3.4) BS01 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    35 8ipb:KB (3.4) BS02 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    36 8ipb:LA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DA12 38267667
    37 8ipb:LA (3.4) BS02 rna ? GO:0003723 ... A0A3B6DA12 38267667
    38 8ipb:LB (3.4) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38267667
    39 8ipb:MA (3.4) BS01 rna ? GO:0002181 ... W5FSM8 38267667
    40 8ipb:MA (3.4) BS02 rna ? GO:0002181 ... W5FSM8 38267667
    41 8ipb:MB (3.4) BS01 rna ? GO:0002181 ... A0A0C4BK99 38267667
    42 8ipb:NA (3.4) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    43 8ipb:NA (3.4) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    44 8ipb:NB (3.4) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38267667
    45 8ipb:OA (3.4) BS01 rna ? GO:0002181 ... W5CDW4 38267667
    46 8ipb:OB (3.4) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38267667
    47 8ipb:PA (3.4) BS01 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    48 8ipb:PA (3.4) BS02 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    49 8ipb:PB (3.4) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38267667
    50 8ipb:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    51 8ipb:QA (3.4) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38267667
    52 8ipb:RA (3.4) BS01 rna ? GO:0003723 ... W4ZRU3 38267667
    53 8ipb:SA (3.4) BS01 rna ? GO:0002181 ... W5G990 38267667
    54 8ipb:TA (3.4) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38267667
    55 8ipb:UA (3.4) BS01 rna ? GO:0003723 ... A0A1D6BC85 38267667
    56 8ipb:UA (3.4) BS02 rna ? GO:0003723 ... A0A1D6BC85 38267667
    57 8ipb:VA (3.4) BS01 rna ? GO:0003735 ... M7ZU91 38267667
    58 8ipb:VA (3.4) BS02 rna ? GO:0003735 ... M7ZU91 38267667
    59 8ipb:WA (3.4) BS01 rna ? GO:0003735 ... W5HX73 38267667
    60 8ipb:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    61 8ipb:XA (3.4) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38267667
    62 8ipb:YA (3.4) BS01 rna ? GO:0003735 ... W5D7B8 38267667
    63 8ipb:YA (3.4) BS02 rna ? GO:0003735 ... W5D7B8 38267667
    64 8ipb:ZA (3.4) BS01 rna ? GO:0002181 ... A0A3B6C0D4 38267667
    65 8ipb:ba (3.4) BS01 rna ? GO:0003735 ... A0A3B6PK86 38267667
    66 8ipb:bb (3.4) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    67 8ipb:ca (3.4) BS01 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    68 8ipb:ca (3.4) BS02 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    69 8ipb:da (3.4) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    70 8ipb:db (3.4) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    71 8ipb:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    72 8ipb:eb (3.4) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    73 8ipb:fb (3.4) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    74 8ipb:ga (3.4) BS01 rna ? GO:0003735 ... W5FV77 38267667
    75 8ipb:gb (3.4) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    76 8ipb:ha (3.4) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    77 8ipb:hb (3.4) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    78 8ipb:ia (3.4) BS01 rna ? GO:0003723 ... Q8L804 38267667
    79 8ipb:ib (3.4) BS01 rna ? GO:0003735 ... W5BFB7 38267667
    80 8ipb:ja (3.4) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    81 8ipb:ka (3.4) BS01 rna ? GO:0000028 ... W5D067 38267667
    82 8ipb:ka (3.4) BS02 MG ? GO:0000028 ... W5D067 38267667
    83 8ipb:la (3.4) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    84 8ipb:ma (3.4) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    85 8ipb:na (3.4) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    86 8ipb:oa (3.4) BS01 rna ? GO:0003676 ... Q8L806 38267667
    87 8ipb:pa (3.4) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    88 8ipb:pa (3.4) BS02 rna ? GO:0003735 ... Q5XUU9 38267667
    89 8ipb:qa (3.4) BS01 rna ? GO:0003735 ... A0A3B5YWZ3 38267667
    90 8ipb:ra (3.4) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    91 8ipb:sa (3.4) BS01 rna ? GO:0000028 ... W5ASA4 38267667
    92 8ipb:ta (3.4) BS01 rna ? GO:0003735 ... W5EP45 38267667
    93 8ipb:ua (3.4) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    94 8ipb:va (3.4) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    95 8ipb:wa (3.4) BS01 rna ? GO:0002181 ... A0A3B6LU46 38267667
    96 8ipb:wa (3.4) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    97 8ipb:xa (3.4) BS01 rna ? GO:0000028 ... W5HZ68 38267667
    98 8ipb:ya (3.4) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    99 8ipb:za (3.4) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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