Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ip9:ba (3.0) BS01 rna ? GO:0003735 ... A0A3B6PK86 38267667
    2 8ip9:bb (3.0) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    3 8ip9:ca (3.0) BS01 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    4 8ip9:cb (3.0) BS01 rna ? GO:0000447 ... W5EL62 38267667
    5 8ip9:da (3.0) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    6 8ip9:db (3.0) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    7 8ip9:db (3.0) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    8 8ip9:eb (3.0) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    9 8ip9:fb (3.0) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    10 8ip9:ga (3.0) BS01 rna ? GO:0003735 ... W5FV77 38267667
    11 8ip9:gb (3.0) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    12 8ip9:ha (3.0) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    13 8ip9:hb (3.0) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    14 8ip9:ia (3.0) BS01 rna ? GO:0003723 ... Q8L804 38267667
    15 8ip9:ib (3.0) BS01 rna ? GO:0003735 ... W5BFB7 38267667
    16 8ip9:ja (3.0) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    17 8ip9:ja (3.0) BS02 MG ? GO:0003723 ... A0A1D5SLI4 38267667
    18 8ip9:ka (3.0) BS01 rna ? GO:0000028 ... W5D067 38267667
    19 8ip9:ka (3.0) BS02 MG ? GO:0000028 ... W5D067 38267667
    20 8ip9:la (3.0) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    21 8ip9:ma (3.0) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    22 8ip9:na (3.0) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    23 8ip9:oa (3.0) BS01 rna ? GO:0003676 ... Q8L806 38267667
    24 8ip9:pa (3.0) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    25 8ip9:qa (3.0) BS01 rna ? GO:0003735 ... A0A3B5YWZ3 38267667
    26 8ip9:ra (3.0) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    27 8ip9:sa (3.0) BS01 rna ? GO:0000028 ... W5ASA4 38267667
    28 8ip9:ta (3.0) BS01 rna ? GO:0003735 ... W5EP45 38267667
    29 8ip9:ua (3.0) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    30 8ip9:va (3.0) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    31 8ip9:wa (3.0) BS01 rna ? GO:0002181 ... A0A3B6LU46 38267667
    32 8ip9:wa (3.0) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    33 8ip9:xa (3.0) BS01 rna ? GO:0000028 ... W5HZ68 38267667
    34 8ip9:ya (3.0) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    35 8ip9:za (3.0) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218