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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ip8:AA (2.9) BS01 rna ? GO:0000470 ... A0A3B6RED0 38267667
    2 8ip8:AA (2.9) BS02 rna ? GO:0000470 ... A0A3B6RED0 38267667
    3 8ip8:AB (2.9) BS01 rna ? GO:0002181 ... Q5I7L5 38267667
    4 8ip8:BA (2.9) BS01 rna ? GO:0003735 ... F4YWL9 38267667
    5 8ip8:BA (2.9) BS02 rna ? GO:0003735 ... F4YWL9 38267667
    6 8ip8:BB (2.9) BS01 rna ? GO:0000463 ... Q8L805 38267667
    7 8ip8:BB (2.9) BS02 rna ? GO:0000463 ... Q8L805 38267667
    8 8ip8:CA (2.9) BS01 rna ? GO:0003735 ... A0A341XZK6 38267667
    9 8ip8:CB (2.9) BS01 rna ? GO:0000463 ... A0A3B6DM38 38267667
    10 8ip8:CB (2.9) BS02 rna ? GO:0000463 ... A0A3B6DM38 38267667
    11 8ip8:DA (2.9) BS01 rna ? GO:0002181 ... W5ECL2 38267667
    12 8ip8:DA (2.9) BS02 rna ? GO:0002181 ... W5ECL2 38267667
    13 8ip8:DA (2.9) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    14 8ip8:DB (2.9) BS01 rna ? GO:0003723 ... Q7X748 38267667
    15 8ip8:DB (2.9) BS02 MG ? GO:0003723 ... Q7X748 38267667
    16 8ip8:EA (2.9) BS01 rna ? GO:0003723 ... A0A3B5XX39 38267667
    17 8ip8:EA (2.9) BS02 rna ? GO:0003723 ... A0A3B5XX39 38267667
    18 8ip8:EA (2.9) BS03 rna ? GO:0003723 ... A0A3B5XX39 38267667
    19 8ip8:EB (2.9) BS01 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    20 8ip8:EB (2.9) BS02 rna ? GO:0003723 ... A0A3B5ZXX7 38267667
    21 8ip8:FA (2.9) BS01 rna ? GO:0002181 ... W5I5G5 38267667
    22 8ip8:FB (2.9) BS01 rna ? GO:0003729 ... Q5I7L1 38267667
    23 8ip8:GA (2.9) BS01 rna ? GO:0003735 ... Q5I7K4 38267667
    24 8ip8:GB (2.9) BS01 rna ? GO:0003735 ... D8L9P6 38267667
    25 8ip8:GB (2.9) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    26 8ip8:HA (2.9) BS01 rna ? GO:0002181 ... W5FEX7 38267667
    27 8ip8:HA (2.9) BS02 rna ? GO:0002181 ... W5FEX7 38267667
    28 8ip8:HB (2.9) BS01 rna ? GO:0000027 ... A0A3B6HUM3 38267667
    29 8ip8:HB (2.9) BS02 rna ? GO:0000027 ... A0A3B6HUM3 38267667
    30 8ip8:IA (2.9) BS01 rna ? GO:0003729 ... A0A3B6DCS5 38267667
    31 8ip8:JA (2.9) BS01 rna ? GO:0003723 ... A0A3B6ATQ1 38267667
    32 8ip8:JB (2.9) BS01 rna ? GO:0003729 ... A0A1D5XNC2 38267667
    33 8ip8:KA (2.9) BS01 rna ? GO:0003735 ... W5BZZ2 38267667
    34 8ip8:KA (2.9) BS02 rna ? GO:0003735 ... W5BZZ2 38267667
    35 8ip8:KB (2.9) BS01 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    36 8ip8:KB (2.9) BS02 rna ? GO:0003723 ... A0A3B6NJZ9 38267667
    37 8ip8:LA (2.9) BS01 rna ? GO:0003723 ... A0A3B6DA12 38267667
    38 8ip8:LA (2.9) BS02 rna ? GO:0003723 ... A0A3B6DA12 38267667
    39 8ip8:LB (2.9) BS01 rna ? GO:0003735 ... A0A3B6QGW3 38267667
    40 8ip8:MA (2.9) BS01 rna ? GO:0002181 ... W5FSM8 38267667
    41 8ip8:MA (2.9) BS02 rna ? GO:0002181 ... W5FSM8 38267667
    42 8ip8:MB (2.9) BS01 rna ? GO:0002181 ... A0A0C4BK99 38267667
    43 8ip8:NA (2.9) BS01 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    44 8ip8:NA (2.9) BS02 rna ? GO:0003735 ... A0A1D5UQZ5 38267667
    45 8ip8:NB (2.9) BS01 rna ? GO:0003735 ... A0A1D5W6Q2 38267667
    46 8ip8:OA (2.9) BS01 rna ? GO:0002181 ... W5CDW4 38267667
    47 8ip8:OB (2.9) BS01 rna ? GO:0002181 ... A0A1D5RRD3 38267667
    48 8ip8:PA (2.9) BS01 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    49 8ip8:PA (2.9) BS02 rna ? GO:0002181 ... A0A3B6GQI2 38267667
    50 8ip8:PB (2.9) BS01 rna ? GO:0003735 ... A0A3B6RFY8 38267667
    51 8ip8:PB (2.9) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    52 8ip8:QA (2.9) BS01 rna ? GO:0003735 ... A0A3B5ZZN9 38267667
    53 8ip8:RA (2.9) BS01 rna ? GO:0003723 ... W4ZRU3 38267667
    54 8ip8:SA (2.9) BS01 rna ? GO:0002181 ... W5G990 38267667
    55 8ip8:TA (2.9) BS01 rna ? GO:0003735 ... A0A3B6SDD9 38267667
    56 8ip8:UA (2.9) BS01 rna ? GO:0003723 ... A0A1D6BC85 38267667
    57 8ip8:UA (2.9) BS02 rna ? GO:0003723 ... A0A1D6BC85 38267667
    58 8ip8:VA (2.9) BS01 rna ? GO:0003735 ... M7ZU91 38267667
    59 8ip8:VA (2.9) BS02 rna ? GO:0003735 ... M7ZU91 38267667
    60 8ip8:WA (2.9) BS01 rna ? GO:0003735 ... W5HX73 38267667
    61 8ip8:WA (2.9) BS02 rna ? GO:0003735 ... W5HX73 38267667
    62 8ip8:WA (2.9) BS03 ZN ? GO:0003735 ... W5HX73 38267667
    63 8ip8:XA (2.9) BS01 rna ? GO:0003723 ... A0A3B6DGT8 38267667
    64 8ip8:YA (2.9) BS01 rna ? GO:0003735 ... W5D7B8 38267667
    65 8ip8:YA (2.9) BS02 rna ? GO:0003735 ... W5D7B8 38267667
    66 8ip8:ZA (2.9) BS01 rna ? GO:0002181 ... A0A3B6C0D4 38267667
    67 8ip8:ba (2.9) BS01 rna ? GO:0003735 ... A0A3B6PK86 38267667
    68 8ip8:bb (2.9) BS01 rna ? GO:0003735 ... A0A3B6IU74 38267667
    69 8ip8:bl (2.9) BS01 rna ? GO:0002184 ... I3NM28 38267667
    70 8ip8:bl (2.9) BS02 rna ? GO:0002184 ... I3NM28 38267667
    71 8ip8:bl (2.9) BS03 rna ? GO:0002184 ... I3NM28 38267667
    72 8ip8:bl (2.9) BS04 rna ? GO:0002184 ... I3NM28 38267667
    73 8ip8:ca (2.9) BS01 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    74 8ip8:ca (2.9) BS02 rna ? GO:0000462 ... A0A3B6AYT7 38267667
    75 8ip8:cb (2.9) BS01 rna ? GO:0000447 ... W5EL62 38267667
    76 8ip8:da (2.9) BS01 rna ? GO:0003723 ... W5AUH7 38267667
    77 8ip8:db (2.9) BS01 rna ? GO:0003729 ... A0A3B6LWE1 38267667
    78 8ip8:db (2.9) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    79 8ip8:eb (2.9) BS01 rna ? GO:0003723 ... W5FPA7 38267667
    80 8ip8:fb (2.9) BS01 rna ? GO:0003723 ... A0A3B6LVN2 38267667
    81 8ip8:ga (2.9) BS01 rna ? GO:0003735 ... W5FV77 38267667
    82 8ip8:gb (2.9) BS01 rna ? GO:0003735 ... A0A2X0SLI3 38267667
    83 8ip8:ha (2.9) BS01 rna ? GO:0005080 ... W5D4F5 38267667
    84 8ip8:hb (2.9) BS01 rna ? GO:0003735 ... Q5I7K2 38267667
    85 8ip8:ia (2.9) BS01 rna ? GO:0003723 ... Q8L804 38267667
    86 8ip8:ib (2.9) BS01 rna ? GO:0003735 ... W5BFB7 38267667
    87 8ip8:ja (2.9) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38267667
    88 8ip8:ja (2.9) BS02 MG ? GO:0003723 ... A0A1D5SLI4 38267667
    89 8ip8:ka (2.9) BS01 rna ? GO:0000028 ... W5D067 38267667
    90 8ip8:ka (2.9) BS02 MG ? GO:0000028 ... W5D067 38267667
    91 8ip8:la (2.9) BS01 rna ? GO:0000462 ... A0A3B6HX49 38267667
    92 8ip8:ma (2.9) BS01 rna ? GO:0003735 ... U5HTD8 38267667
    93 8ip8:na (2.9) BS01 rna ? GO:0000028 ... A0A3B6SS17 38267667
    94 8ip8:oa (2.9) BS01 rna ? GO:0003676 ... Q8L806 38267667
    95 8ip8:pa (2.9) BS01 rna ? GO:0003735 ... Q5XUU9 38267667
    96 8ip8:pa (2.9) BS02 rna ? GO:0003735 ... Q5XUU9 38267667
    97 8ip8:qa (2.9) BS01 rna ? GO:0003735 ... A0A3B5YWZ3 38267667
    98 8ip8:ra (2.9) BS01 rna ? GO:0003735 ... W5FWF5 38267667
    99 8ip8:sa (2.9) BS01 rna ? GO:0000028 ... W5ASA4 38267667
    100 8ip8:ta (2.9) BS01 rna ? GO:0003735 ... W5EP45 38267667
    101 8ip8:ua (2.9) BS01 rna ? GO:0003735 ... Q7X9K4 38267667
    102 8ip8:va (2.9) BS01 rna ? GO:0003735 ... A0A077RZD1 38267667
    103 8ip8:wa (2.9) BS01 rna ? GO:0002181 ... A0A3B6LU46 38267667
    104 8ip8:wa (2.9) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    105 8ip8:xa (2.9) BS01 rna ? GO:0000028 ... W5HZ68 38267667
    106 8ip8:ya (2.9) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38267667
    107 8ip8:za (2.9) BS01 rna ? GO:0000028 ... W5E2W7 38267667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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