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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ink:4 (3.2) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    2 8ink:4 (3.2) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    3 8ink:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    4 8ink:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    5 8ink:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    6 8ink:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    7 8ink:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    8 8ink:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    9 8ink:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    10 8ink:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    11 8ink:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    12 8ink:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    13 8ink:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    14 8ink:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    15 8ink:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    16 8ink:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    17 8ink:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    18 8ink:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    19 8ink:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    20 8ink:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    21 8ink:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    22 8ink:M (3.2) BS01 rna ? GO:0002181 ... P61927 37491604
    23 8ink:M (3.2) BS02 rna ? GO:0002181 ... P61927 37491604
    24 8ink:N (3.2) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    25 8ink:O (3.2) BS01 rna ? GO:0001501 ... P63173 37491604
    26 8ink:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    27 8ink:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    28 8ink:Q (3.2) BS01 rna ? GO:0001824 ... P26373 37491604
    29 8ink:Q (3.2) BS02 rna ? GO:0001824 ... P26373 37491604
    30 8ink:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    31 8ink:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    32 8ink:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    33 8ink:T (3.2) BS01 rna ? GO:0002181 ... P46778 37491604
    34 8ink:T (3.2) BS02 rna ? GO:0002181 ... P46778 37491604
    35 8ink:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    36 8ink:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    37 8ink:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    38 8ink:W (3.2) BS01 rna ? GO:0000027 ... Q9NVX2 37491604
    39 8ink:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    40 8ink:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    41 8ink:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    42 8ink:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    43 8ink:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    44 8ink:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    45 8ink:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    46 8ink:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    47 8ink:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    48 8ink:g (3.2) BS01 rna ? GO:0000027 ... P62750 37491604
    49 8ink:g (3.2) BS02 rna ? GO:0000027 ... P62750 37491604
    50 8ink:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    51 8ink:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    52 8ink:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    53 8ink:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    54 8ink:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    55 8ink:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    56 8ink:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    57 8ink:n (3.2) BS01 rna ? GO:0000049 ... P18077 37491604
    58 8ink:o (3.2) BS01 rna ? GO:0000027 ... Q02878 37491604
    59 8ink:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    60 8ink:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    61 8ink:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    62 8ink:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    63 8ink:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    64 8ink:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    65 8ink:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    66 8ink:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    67 8ink:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    68 8ink:z (3.2) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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