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BioLiP
Download all results in tab-seperated text for 78 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8inf:1 (3.0) BS01 rna ? N/A E9PRG8 37491604
    2 8inf:1 (3.0) BS02 rna ? N/A E9PRG8 37491604
    3 8inf:3 (3.0) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    4 8inf:3 (3.0) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    5 8inf:3 (3.0) BS03 rna ? GO:0000463 ... Q6DKI1 37491604
    6 8inf:4 (3.0) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    7 8inf:4 (3.0) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    8 8inf:6 (3.0) BS01 rna ? GO:0000054 ... P56537 37491604
    9 8inf:7 (3.0) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    10 8inf:9 (3.0) BS01 rna ? GO:0003676 ... O00488 37491604
    11 8inf:A (3.0) BS01 rna ? GO:0003723 ... Q13823 37491604
    12 8inf:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    13 8inf:B (3.0) BS01 rna ? GO:0002181 ... P39023 37491604
    14 8inf:C (3.0) BS01 rna ? GO:0002181 ... P47914 37491604
    15 8inf:D (3.0) BS01 rna ? GO:0002181 ... P36578 37491604
    16 8inf:D (3.0) BS02 rna ? GO:0002181 ... P36578 37491604
    17 8inf:E (3.0) BS01 rna ? GO:0002181 ... P62888 37491604
    18 8inf:F (3.0) BS01 rna ? GO:0002181 ... P49207 37491604
    19 8inf:G (3.0) BS01 rna ? GO:0000470 ... P62424 37491604
    20 8inf:G (3.0) BS02 rna ? GO:0000470 ... P62424 37491604
    21 8inf:H (3.0) BS01 rna ? GO:0000463 ... P42766 37491604
    22 8inf:H (3.0) BS02 rna ? GO:0000463 ... P42766 37491604
    23 8inf:I (3.0) BS01 rna ? GO:0002181 ... P32969 37491604
    24 8inf:J (3.0) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    25 8inf:K (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    26 8inf:L (3.0) BS01 rna ? GO:0002181 ... P46776 37491604
    27 8inf:M (3.0) BS01 rna ? GO:0002181 ... P61927 37491604
    28 8inf:M (3.0) BS02 rna ? GO:0002181 ... P61927 37491604
    29 8inf:N (3.0) BS01 rna ? GO:0000027 ... P62913 37491604
    30 8inf:N (3.0) BS02 rna ? GO:0000027 ... P62913 37491604
    31 8inf:O (3.0) BS01 rna ? GO:0001501 ... P63173 37491604
    32 8inf:P (3.0) BS01 rna ? GO:0002181 ... P62891 37491604
    33 8inf:P (3.0) BS02 rna ? GO:0002181 ... P62891 37491604
    34 8inf:Q (3.0) BS01 rna ? GO:0001824 ... P26373 37491604
    35 8inf:Q (3.0) BS02 rna ? GO:0001824 ... P26373 37491604
    36 8inf:R (3.0) BS01 rna ? GO:0005515 ... Q96EY4 37491604
    37 8inf:R (3.0) BS02 rna ? GO:0005515 ... Q96EY4 37491604
    38 8inf:S (3.0) BS01 rna ? GO:0002181 ... P50914 37491604
    39 8inf:T (3.0) BS01 rna ? N/A Q9UNZ5 37491604
    40 8inf:U (3.0) BS01 rna ? GO:0002181 ... P61313 37491604
    41 8inf:U (3.0) BS02 rna ? GO:0002181 ... P61313 37491604
    42 8inf:V (3.0) BS01 rna ? GO:0002181 ... P40429 37491604
    43 8inf:W (3.0) BS01 rna ? GO:0002181 ... P83881 37491604
    44 8inf:X (3.0) BS01 rna ? GO:0002181 ... P61513 37491604
    45 8inf:Y (3.0) BS01 rna ? GO:0002181 ... P18621 37491604
    46 8inf:Y (3.0) BS02 rna ? GO:0002181 ... P18621 37491604
    47 8inf:Z (3.0) BS01 rna ? GO:0002181 ... Q07020 37491604
    48 8inf:a (3.0) BS01 rna ? GO:0002181 ... P84098 37491604
    49 8inf:b (3.0) BS01 rna ? GO:0002181 ... Q02543 37491604
    50 8inf:b (3.0) BS02 rna ? GO:0002181 ... Q02543 37491604
    51 8inf:c (3.0) BS01 rna ? GO:0002181 ... P46778 37491604
    52 8inf:d (3.0) BS01 rna ? GO:0002181 ... P35268 37491604
    53 8inf:e (3.0) BS01 rna ? GO:0000122 ... P62829 37491604
    54 8inf:f (3.0) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    55 8inf:g (3.0) BS01 rna ? GO:0000027 ... P62750 37491604
    56 8inf:g (3.0) BS02 rna ? GO:0000027 ... P62750 37491604
    57 8inf:h (3.0) BS01 rna ? GO:0002181 ... P61254 37491604
    58 8inf:h (3.0) BS02 rna ? GO:0002181 ... P61254 37491604
    59 8inf:i (3.0) BS01 rna ? GO:0002181 ... P61353 37491604
    60 8inf:j (3.0) BS01 rna ? GO:0002181 ... P62899 37491604
    61 8inf:k (3.0) BS01 rna ? GO:0002181 ... P62910 37491604
    62 8inf:l (3.0) BS01 rna ? GO:0002181 ... P46779 37491604
    63 8inf:m (3.0) BS01 rna ? GO:0002181 ... P62917 37491604
    64 8inf:n (3.0) BS01 rna ? GO:0000049 ... P18077 37491604
    65 8inf:o (3.0) BS01 rna ? GO:0000027 ... Q02878 37491604
    66 8inf:p (3.0) BS01 rna ? GO:0000463 ... P18124 37491604
    67 8inf:p (3.0) BS02 rna ? GO:0000463 ... P18124 37491604
    68 8inf:q (3.0) BS01 rna ? GO:0002181 ... P62906 37491604
    69 8inf:r (3.0) BS01 rna ? GO:0000027 ... P46777 37491604
    70 8inf:r (3.0) BS02 rna ? GO:0000027 ... P46777 37491604
    71 8inf:s (3.0) BS01 rna ? GO:0000460 ... O95478 37491604
    72 8inf:t (3.0) BS01 rna ? GO:0000463 ... Q9BYG3 37491604
    73 8inf:u (3.0) BS01 rna ? GO:0000462 ... O76021 37491604
    74 8inf:v (3.0) BS01 rna ? GO:0000463 ... O00541 37491604
    75 8inf:v (3.0) BS02 rna ? GO:0000463 ... O00541 37491604
    76 8inf:w (3.0) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    77 8inf:y (3.0) BS01 rna ? GO:0002181 ... P30050 37491604
    78 8inf:z (3.0) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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