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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8i7j:A (4.6) BS01 rna ? GO:0000028 ... Q6CN12 N/A
    2 8i7j:B (4.6) BS01 rna ? GO:0003735 ... Q6CWD0 N/A
    3 8i7j:C (4.6) BS01 rna ? GO:0003723 ... Q6CKL3 N/A
    4 8i7j:D (4.6) BS01 rna ? GO:0003723 ... Q6CRK7 N/A
    5 8i7j:E (4.6) BS01 rna ? GO:0003723 ... Q6CWJ2 N/A
    6 8i7j:F (4.6) BS01 rna ? GO:0000028 ... Q6CRA3 N/A
    7 8i7j:G (4.6) BS01 rna ? GO:0003735 ... Q6CM04 N/A
    8 8i7j:H (4.6) BS01 rna ? GO:0003735 ... Q6CTD6 N/A
    9 8i7j:I (4.6) BS01 rna ? GO:0000462 ... Q6CMG3 N/A
    10 8i7j:J (4.6) BS01 rna ? GO:0003723 ... Q6CM18 N/A
    11 8i7j:K (4.6) BS01 rna ? GO:0003723 ... Q6CVZ5 N/A
    12 8i7j:L (4.6) BS01 rna ? GO:0003735 ... Q6CX80 N/A
    13 8i7j:M (4.6) BS01 rna ? GO:0003735 ... Q6CLU4 N/A
    14 8i7j:N (4.6) BS01 rna ? GO:0003735 ... Q6CJK0 N/A
    15 8i7j:O (4.6) BS01 rna ? GO:0000028 ... P27069 N/A
    16 8i7j:P (4.6) BS01 rna ? GO:0000028 ... Q6CKV4 N/A
    17 8i7j:Q (4.6) BS01 rna ? GO:0000462 ... Q875N2 N/A
    18 8i7j:R (4.6) BS01 rna ? GO:0003735 ... Q6CWU3 N/A
    19 8i7j:S (4.6) BS01 rna ? GO:0003676 ... Q6CWT9 N/A
    20 8i7j:T (4.6) BS01 rna ? GO:0000028 ... Q6CXM0 N/A
    21 8i7j:U (4.6) BS01 rna ? GO:0003735 ... Q6CIM1 N/A
    22 8i7j:V (4.6) BS01 rna ? GO:0000447 ... Q6CXT6 N/A
    23 8i7j:W (4.6) BS01 rna ? GO:0003735 ... Q6CW21 N/A
    24 8i7j:X (4.6) BS01 rna ? GO:0003735 ... F2Z602 N/A
    25 8i7j:Y (4.6) BS01 rna ? GO:0003735 ... Q6CU44 N/A
    26 8i7j:Z (4.6) BS01 rna ? GO:0003735 ... Q6CW78 N/A
    27 8i7j:a (4.6) BS01 rna ? GO:0003729 ... Q6CS01 N/A
    28 8i7j:a (4.6) BS02 ZN ? GO:0003729 ... Q6CS01 N/A
    29 8i7j:b (4.6) BS01 rna ? GO:0000028 ... Q6CNL2 N/A
    30 8i7j:c (4.6) BS01 rna ? GO:0000028 ... P33285 N/A
    31 8i7j:d (4.6) BS01 rna ? GO:0003735 ... Q6CPG3 N/A
    32 8i7j:e (4.6) BS01 rna ? GO:0003735 ... Q6CUH5 N/A
    33 8i7j:f (4.6) BS01 rna ? GO:0003735 ... P69061 N/A
    34 8i7j:g (4.6) BS01 rna ? GO:0001934 ... Q6CNI7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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