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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8i0t:1 (3.0) BS01 rna N/A GO:0000245 ... O75533 39068178
    2 8i0t:1 (3.0) BS02 rna N/A GO:0000245 ... O75533 39068178
    3 8i0t:2 (3.0) BS01 rna N/A GO:0000398 ... Q13435 39068178
    4 8i0t:2 (3.0) BS02 rna N/A GO:0000398 ... Q13435 39068178
    5 8i0t:7 (3.0) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    6 8i0t:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    7 8i0t:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    8 8i0t:A (3.0) BS01 rna N/A GO:0000244 ... Q6P2Q9 39068178
    9 8i0t:A (3.0) BS02 rna N/A GO:0000244 ... Q6P2Q9 39068178
    10 8i0t:A (3.0) BS03 rna N/A GO:0000244 ... Q6P2Q9 39068178
    11 8i0t:A (3.0) BS04 rna N/A GO:0000244 ... Q6P2Q9 39068178
    12 8i0t:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    13 8i0t:C (3.0) BS01 rna N/A GO:0000398 ... Q15029 39068178
    14 8i0t:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    15 8i0t:J (3.0) BS01 rna N/A GO:0000245 ... Q9BZJ0 39068178
    16 8i0t:K (3.0) BS01 rna N/A GO:0000398 ... O15541 39068178
    17 8i0t:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    18 8i0t:L (3.0) BS01 rna N/A GO:0000077 ... Q99459 39068178
    19 8i0t:N (3.0) BS01 rna N/A GO:0000398 ... P41223 39068178
    20 8i0t:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    21 8i0t:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    22 8i0t:O (3.0) BS01 rna N/A GO:0000398 ... Q9NW64 39068178
    23 8i0t:O (3.0) BS02 rna N/A GO:0000398 ... Q9NW64 39068178
    24 8i0t:P (3.0) BS01 rna N/A GO:0000398 ... Q9P013 39068178
    25 8i0t:R (3.0) BS01 rna N/A GO:0000122 ... Q13573 39068178
    26 8i0t:T (3.0) BS01 rna N/A GO:0000398 ... O43660 39068178
    27 8i0t:U (3.0) BS01 rna N/A GO:0000398 ... Q9UQ35 39068178
    28 8i0t:X (3.0) BS01 rna N/A GO:0000398 ... O60231 39068178
    29 8i0t:Y (3.0) BS01 rna N/A GO:0003723 ... Q8WUA2 39068178
    30 8i0t:a (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    31 8i0t:b (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    32 8i0t:d (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    33 8i0t:e (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    34 8i0t:g (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    35 8i0t:h (3.0) BS01 rna N/A GO:0000245 ... P62316 39068178
    36 8i0t:i (3.0) BS01 rna N/A GO:0000387 ... P62306 39068178
    37 8i0t:j (3.0) BS01 rna N/A GO:0000245 ... P62304 39068178
    38 8i0t:k (3.0) BS01 rna N/A GO:0000245 ... P62308 39068178
    39 8i0t:l (3.0) BS01 rna N/A GO:0000243 ... P62318 39068178
    40 8i0t:m (3.0) BS01 rna N/A GO:0000387 ... P14678 39068178
    41 8i0t:n (3.0) BS01 rna N/A GO:0000243 ... P62314 39068178
    42 8i0t:p (3.0) BS01 rna N/A GO:0000398 ... P08579 39068178
    43 8i0t:v (3.0) BS01 rna N/A GO:0000245 ... Q15428 39068178
    44 8i0t:v (3.0) BS02 rna N/A GO:0000245 ... Q15428 39068178
    45 8i0t:w (3.0) BS01 rna N/A GO:0000375 ... Q12874 39068178
    46 8i0t:w (3.0) BS02 rna N/A GO:0000375 ... Q12874 39068178
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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