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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8hl3:AEFG (4.8) BS01 rna ? GO:0003746 ... P23112 37604686
    2 8hl3:AEFG (4.8) BS02 rna ? GO:0003746 ... P23112 37604686
    3 8hl3:AEFG (4.8) BS03 GNP ? GO:0003746 ... P23112 37604686
    4 8hl3:AL1P (4.8) BS01 rna ? GO:0000049 ... P35024 37604686
    5 8hl3:AL2P (4.8) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    6 8hl3:AL3P (4.8) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    7 8hl3:AL4P (4.8) BS01 rna ? GO:0003723 ... Q4JB41 37604686
    8 8hl3:AL5P (4.8) BS01 rna ? GO:0000049 ... P41202 37604686
    9 8hl3:AL5P (4.8) BS02 rna ? GO:0000049 ... P41202 37604686
    10 8hl3:AL6P (4.8) BS01 rna ? GO:0002181 ... O05637 37604686
    11 8hl3:ALX0 (4.8) BS01 rna ? GO:0003735 ... P38613 37604686
    12 8hl3:AS2P (4.8) BS01 rna ? GO:0003735 ... P39478 37604686
    13 8hl3:AS3P (4.8) BS01 rna ? GO:0003676 ... Q4JB46 37604686
    14 8hl3:AS4E (4.8) BS01 rna ? GO:0003723 ... O05634 37604686
    15 8hl3:AS4P (4.8) BS01 rna ? GO:0003723 ... P39467 37604686
    16 8hl3:AS5P (4.8) BS01 rna ? GO:0003723 ... O05641 37604686
    17 8hl3:AS5P (4.8) BS02 UNK ? GO:0003723 ... O05641 37604686
    18 8hl3:AS5P (4.8) BS03 UNK ? GO:0003723 ... O05641 37604686
    19 8hl3:AS5P (4.8) BS04 UNK ? GO:0003723 ... O05641 37604686
    20 8hl3:AS6E (4.8) BS01 rna ? GO:0003735 ... Q4JAI1 37604686
    21 8hl3:AS7P (4.8) BS01 rna ? GO:0000028 ... P17198 37604686
    22 8hl3:AS8E (4.8) BS01 rna ? GO:0000462 ... Q4JAP5 37604686
    23 8hl3:AS8E (4.8) BS02 rna ? GO:0000462 ... Q4JAP5 37604686
    24 8hl3:AS8P (4.8) BS01 rna ? GO:0003735 ... O05636 37604686
    25 8hl3:AS9P (4.8) BS01 rna ? GO:0000462 ... P39468 37604686
    26 8hl3:L10E (4.8) BS01 rna ? GO:0000027 ... Q4JC84 37604686
    27 8hl3:L10E (4.8) BS02 rna ? GO:0000027 ... Q4JC84 37604686
    28 8hl3:L13P (4.8) BS01 rna ? GO:0003729 ... P39473 37604686
    29 8hl3:L141 (4.8) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    30 8hl3:L142 (4.8) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    31 8hl3:L14P (4.8) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    32 8hl3:L14P (4.8) BS02 rna ? GO:0003735 ... Q4JB50 37604686
    33 8hl3:L15E (4.8) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    34 8hl3:L15P (4.8) BS01 rna ? GO:0003735 ... O05643 37604686
    35 8hl3:L18E (4.8) BS01 rna ? GO:0003735 ... P39474 37604686
    36 8hl3:L18P (4.8) BS01 rna ? GO:0000027 ... O05640 37604686
    37 8hl3:L18P (4.8) BS02 rna ? GO:0000027 ... O05640 37604686
    38 8hl3:L19E (4.8) BS01 rna ? GO:0003723 ... O05639 37604686
    39 8hl3:L21E (4.8) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    40 8hl3:L21E (4.8) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    41 8hl3:L22P (4.8) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    42 8hl3:L23P (4.8) BS01 rna ? GO:0000027 ... Q4JB42 37604686
    43 8hl3:L24E (4.8) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    44 8hl3:L24P (4.8) BS01 rna ? GO:0002181 ... O05633 37604686
    45 8hl3:L29P (4.8) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    46 8hl3:L30E (4.8) BS01 rna ? GO:0003723 ... P11522 37604686
    47 8hl3:L30P (4.8) BS01 rna ? GO:0000463 ... O05642 37604686
    48 8hl3:L31E (4.8) BS01 rna ? GO:0003735 ... P38618 37604686
    49 8hl3:L32E (4.8) BS01 rna ? GO:0003735 ... O05638 37604686
    50 8hl3:L34E (4.8) BS01 rna ? GO:0003735 ... O05981 37604686
    51 8hl3:L37A (4.8) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    52 8hl3:L37E (4.8) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    53 8hl3:L39E (4.8) BS01 rna ? GO:0003735 ... P13005 37604686
    54 8hl3:L40E (4.8) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    55 8hl3:L44E (4.8) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    56 8hl3:L45A (4.8) BS01 rna ? N/A Q4J9G6 37604686
    57 8hl3:L46A (4.8) BS01 rna ? N/A Q4J953 37604686
    58 8hl3:L47A (4.8) BS01 rna ? N/A F2Z6C4 37604686
    59 8hl3:L7A1 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    60 8hl3:L7A2 (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    61 8hl3:S10P (4.8) BS01 rna ? GO:0000049 ... P17199 37604686
    62 8hl3:S11P (4.8) BS01 rna ? GO:0003735 ... P39469 37604686
    63 8hl3:S12P (4.8) BS01 rna ? GO:0003735 ... P11524 37604686
    64 8hl3:S13P (4.8) BS01 rna ? GO:0003676 ... P39470 37604686
    65 8hl3:S14P (4.8) BS01 rna ? GO:0003723 ... O05635 37604686
    66 8hl3:S15P (4.8) BS01 rna ? GO:0003735 ... Q4JAI3 37604686
    67 8hl3:S17E (4.8) BS01 rna ? GO:0003735 ... Q4JAX5 37604686
    68 8hl3:S17P (4.8) BS01 rna ? GO:0003735 ... Q4JB49 37604686
    69 8hl3:S19E (4.8) BS01 rna ? GO:0000028 ... Q4J8U1 37604686
    70 8hl3:S19P (4.8) BS01 rna ? GO:0003723 ... Q4JB44 37604686
    71 8hl3:S24E (4.8) BS01 rna ? GO:0003735 ... Q4JAF9 37604686
    72 8hl3:S27A (4.8) BS01 rna ? GO:0003735 ... Q4JAG0 37604686
    73 8hl3:S27E (4.8) BS01 rna ? GO:0003735 ... Q4J9B1 37604686
    74 8hl3:S28E (4.8) BS01 rna ? GO:0003735 ... Q4JAV1 37604686
    75 8hl3:S3AE (4.8) BS01 rna ? GO:0003735 ... Q4JB17 37604686
    76 8hl3:SL7A (4.8) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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